LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
XLOC_008979
hsa-miR-133b
0.701
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018625
Biotype: transcript isomorph
Gene id: XLOC_008979
Gene Name: XLOC_008979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2974-2992
0.009
0
7mer
1738-1756
0.005
1
6mer
916-941
0.004
2
6mer
265-286
0.003
1
6mer
1285-1304
0.003
1
6mer
1267-1282
0.001
1
XLOC_009524
hsa-miR-133b
0.701
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019731
Biotype: transcript isomorph
Gene id: XLOC_009524
Gene Name: XLOC_009524
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-30
0.019
1
6mer
200-219
0.005
1
ZNF571-AS1
hsa-miR-133b
0.700
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590838
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2220-2244
0.013
2
6mer
2485-2510
0.005
0
6mer
1520-1524
0.003
2
6mer
629-651
0.002
0
6mer
644-665
0.002
1
AC008132.15
hsa-miR-133b
0.700
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000611876
Biotype: lincRNA
Gene id: ENSG00000182824
Gene Name: AC008132.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1004-1008
0.014
0
6mer
436-456
0.010
0
FTCD-AS1
hsa-miR-133b
0.700
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000446649
Biotype: antisense
Gene id: ENSG00000237338
Gene Name: FTCD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
72-96
0.025
5
DSCR9
hsa-miR-133b
0.700
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000584840
Biotype: lincRNA
Gene id: ENSG00000230366
Gene Name: DSCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-647
0.025
2
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