LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-562A8.4
hsa-miR-133b
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560380
Biotype: antisense
Gene id: ENSG00000259298
Gene Name: RP11-562A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
606-620
0.025
8
LHFPL3-AS1
hsa-miR-133b
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417290
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-677
0.011
0
6mer
371-395
0.010
6
6mer
679-698
0.005
1
RP11-705O1.8
hsa-miR-133b
0.706
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581677
Biotype: lincRNA
Gene id: ENSG00000263884
Gene Name: RP11-705O1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1614-1637
0.022
Not Conserved
6mer
1294-1310
0.003
1
RP5-944M2.3
hsa-miR-133b
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000397346
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2140-2158
0.013
1
6mer
190-208
0.004
1
6mer
2114-2118
0.004
0
6mer
2151-2167
0.003
0
AC007246.3
hsa-miR-133b
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000366187
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-126
0.025
3
CTA-249B10.1
hsa-miR-133b
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568036
Biotype: lincRNA
Gene id: ENSG00000261636
Gene Name: CTA-249B10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-179
0.021
2
6mer
347-374
0.004
2
ZNRD1-AS1
hsa-miR-133b
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9688-9709
0.009
0
6mer
8915-8936
0.007
1
6mer
8456-8481
0.003
1
6mer
6910-6928
0.003
1
6mer
4485-4504
0.002
0
6mer
4461-4478
0.001
0
XLOC_004985
hsa-miR-133b
0.704
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011029
Biotype: transcript isomorph
Gene id: XLOC_004985
Gene Name: XLOC_004985
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-36
0.025
2
RP11-634B7.4
hsa-miR-133b
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-316
0.017
0
6mer
1505-1516
0.008
1
RP11-2B6.2
hsa-miR-133b
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602652
Biotype: lincRNA
Gene id: ENSG00000269929
Gene Name: RP11-2B6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-974
0.025
2
RP11-309H21.3
hsa-miR-133b
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2937-2941
0.011
0
6mer
844-862
0.008
0
6mer
1338-1361
0.005
0
CTD-2197I11.1
hsa-miR-133b
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510935
Biotype: antisense
Gene id: ENSG00000250383
Gene Name: CTD-2197I11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-76
0.025
1
LINC01028
hsa-miR-133b
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588782
Biotype: lincRNA
Gene id: ENSG00000267603
Gene Name: LINC01028
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-209
0.025
5
RP11-386G11.5
hsa-miR-133b
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547866
Biotype: antisense
Gene id: ENSG00000257913
Gene Name: RP11-386G11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2088-2104
0.023
6
6mer
631-653
0.002
1
RP11-261N11.8
hsa-miR-133b
0.703
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370257
Biotype: antisense
Gene id: ENSG00000203900
Gene Name: RP11-261N11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-603
0.013
0
8mer
2850-2877
0.011
Not Conserved
6mer
604-623
0.001
Not Conserved
RP11-266K4.14
hsa-miR-133b
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-665
0.015
0
6mer
997-1001
0.010
1
RP11-561I11.4
hsa-miR-133b
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608241
Biotype: antisense
Gene id: ENSG00000272865
Gene Name: RP11-561I11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-211
0.020
3
6mer
137-160
0.005
1
AC004448.5
hsa-miR-133b
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609396
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
279-283
0.017
1
6mer
612-629
0.008
0
RMST
hsa-miR-133b
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538559
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-636
0.023
7
6mer
1417-1421
0.002
1
LINC01350
hsa-miR-133b
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439633
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-377
0.025
4
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