LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
AC138035.2
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
971-976
0.025
1
SOX2-OT
hsa-miR-133b
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460739
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-408
0.025
6
RP11-314B1.2
hsa-miR-133b
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1176-1197
0.016
11
6mer
1554-1571
0.004
10
6mer
4319-4338
0.003
4
6mer
1980-2004
0.002
0
FLJ32255
hsa-miR-133b
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2290-2302
0.025
1
LINC01483
hsa-miR-133b
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-180
0.016
2
6mer
2181-2185
0.004
2
6mer
2272-2297
0.003
0
6mer
1698-1720
0.002
0
RP11-160O5.1
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582940
Biotype: lincRNA
Gene id: ENSG00000263470
Gene Name: RP11-160O5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
356-367
0.025
0
PCAT19
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
353-358
0.013
1
6mer
173-197
0.012
1
CTD-2540B15.11
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589932
Biotype: antisense
Gene id: ENSG00000267580
Gene Name: CTD-2540B15.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
333-356
0.009
8
6mer
275-279
0.008
6
6mer
369-373
0.008
7
XLOC_003730
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008287
Biotype: transcript isomorph
Gene id: XLOC_003730
Gene Name: XLOC_003730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
346-364
0.010
2
6mer
501-505
0.008
2
6mer
112-123
0.007
1
FLJ36777
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499242
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1043-1053
0.017
0
6mer
415-436
0.009
2
XLOC_002882
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006281
Biotype: transcript isomorph
Gene id: XLOC_002882
Gene Name: XLOC_002882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-66
0.013
1
6mer
6543-6547
0.005
1
6mer
3664-3668
0.002
1
6mer
3467-3489
0.002
1
6mer
4598-4623
0.002
1
6mer
2221-2226
0.002
1
RP11-597D13.9
hsa-miR-133b
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505532
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
992-1017
0.011
1
6mer
2172-2176
0.008
3
6mer
214-224
0.006
2
XLOC_004621
hsa-miR-133b
0.708
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010155
Biotype: transcript isomorph
Gene id: XLOC_004621
Gene Name: XLOC_004621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-33
0.020
2
6mer
424-436
0.005
1
XLOC_008184
hsa-miR-133b
0.708
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017069
Biotype: transcript isomorph
Gene id: XLOC_008184
Gene Name: XLOC_008184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-503
0.015
2
6mer
91-95
0.007
1
6mer
444-462
0.003
0
RP11-701B16.2
hsa-miR-133b
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554253
Biotype: processed_transcript
Gene id: ENSG00000258782
Gene Name: RP11-701B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-585
0.025
4
RP11-438B23.2
hsa-miR-133b
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5614-5631
0.025
1
AC003009.1
hsa-miR-133b
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571611
Biotype: antisense
Gene id: ENSG00000262011
Gene Name: AC003009.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-605
0.025
1
XLOC_007720
hsa-miR-133b
0.707
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016340
Biotype: transcript isomorph
Gene id: XLOC_007720
Gene Name: XLOC_007720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
114-133
0.013
6
6mer
64-68
0.007
3
6mer
69-73
0.005
0
SLC16A1-AS1
hsa-miR-133b
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420168
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-895
0.025
1
RP11-367G6.3
hsa-miR-133b
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606385
Biotype: lincRNA
Gene id: ENSG00000272053
Gene Name: RP11-367G6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-145
0.025
2
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