LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-218I7.2
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-169
0.026
2
RP11-271F18.1
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000455871
Biotype: lincRNA
Gene id: ENSG00000234306
Gene Name: RP11-271F18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-119
0.026
7
RP11-364B14.1
hsa-miR-133b
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000417426
Biotype: lincRNA
Gene id: ENSG00000233145
Gene Name: RP11-364B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
172-176
0.010
1
6mer
276-298
0.009
1
6mer
527-537
0.006
0
AC003973.4
hsa-miR-133b
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1022-1047
0.026
0
RP11-697E22.3
hsa-miR-133b
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617867
Biotype: lincRNA
Gene id: ENSG00000274244
Gene Name: RP11-697E22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
560-576
0.009
4
7mer
275-298
0.008
2
6mer
102-113
0.008
3
XLOC_011413
hsa-miR-133b
0.714
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023601
Biotype: transcript isomorph
Gene id: XLOC_011413
Gene Name: XLOC_011413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2171-2191
0.026
7
AC011286.1
hsa-miR-133b
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455068
Biotype: lincRNA
Gene id: ENSG00000232328
Gene Name: AC011286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
537-553
0.026
1
CTD-3185P2.1
hsa-miR-133b
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-344
0.020
1
6mer
833-850
0.003
1
6mer
1461-1482
0.003
1
RP11-727A23.10
hsa-miR-133b
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534572
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-176
0.026
4
XLOC_013732
hsa-miR-133b
0.713
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028662
Biotype: transcript isomorph
Gene id: XLOC_013732
Gene Name: XLOC_013732
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1787-1792
0.026
4
XLOC_006091
hsa-miR-133b
0.713
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013442
Biotype: transcript isomorph
Gene id: XLOC_006091
Gene Name: XLOC_006091
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-376
0.026
1
AP001465.5
hsa-miR-133b
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427446
Biotype: lincRNA
Gene id: ENSG00000228159
Gene Name: AP001465.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-482
0.026
1
RP11-76E17.4
hsa-miR-133b
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556763
Biotype: lincRNA
Gene id: ENSG00000258831
Gene Name: RP11-76E17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-105
0.012
1
7mer
107-125
0.008
1
6mer
867-871
0.006
2
RP11-802E16.3
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526897
Biotype: antisense
Gene id: ENSG00000255031
Gene Name: RP11-802E16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-540
0.018
1
6mer
730-734
0.007
2
RP11-749H17.1
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586386
Biotype: sense_intronic
Gene id: ENSG00000266988
Gene Name: RP11-749H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-200
0.013
2
7mer
464-469
0.012
0
RP11-421E14.2
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581917
Biotype: sense_intronic
Gene id: ENSG00000264895
Gene Name: RP11-421E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-251
0.015
0
6mer
2075-2092
0.007
2
6mer
1264-1283
0.004
0
FAM13A-AS1
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500765
Biotype: antisense
Gene id: ENSG00000248019
Gene Name: FAM13A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
949-967
0.020
2
6mer
340-344
0.003
Not Conserved
6mer
2059-2074
0.003
1
XLOC_002602
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005970
Biotype: transcript isomorph
Gene id: XLOC_002602
Gene Name: XLOC_002602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
433-459
0.021
0
6mer
874-878
0.005
3
XLOC_010233
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020963
Biotype: transcript isomorph
Gene id: XLOC_010233
Gene Name: XLOC_010233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
200-221
0.025
0
AC093323.3
hsa-miR-133b
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000307533
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2241-2258
0.021
1
6mer
257-275
0.005
0
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