LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-679C8.2
hsa-miR-133b
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508362
Biotype: antisense
Gene id: ENSG00000250938
Gene Name: RP11-679C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-499
0.026
1
LINC01096
hsa-miR-133b
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_015450.1
Biotype: lincRNA
Gene id: NR_015450.1 (gene)
Gene Name: LINC01096
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
52-60
0.009
4
6mer
324-341
0.008
5
6mer
97-120
0.007
1
6mer
528-551
0.002
1
RP11-392P7.6
hsa-miR-133b
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000607894
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
640-658
0.026
2
AC007003.1
hsa-miR-133b
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439318
Biotype: sense_intronic
Gene id: ENSG00000231183
Gene Name: AC007003.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-324
0.026
4
XLOC_010651
hsa-miR-133b
0.720
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3071-3080
0.007
1
7mer
2141-2156
0.007
1
6mer
557-569
0.006
1
6mer
1251-1275
0.003
1
6mer
1142-1160
0.002
1
SOX2-OT
hsa-miR-133b
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594942
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-243
0.026
6
RP1-309F20.3
hsa-miR-133b
0.720
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000424434
Biotype: antisense
Gene id: ENSG00000225806
Gene Name: RP1-309F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-272
0.026
1
RP11-108M9.3
hsa-miR-133b
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438002
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-202
0.013
0
6mer
2454-2464
0.013
1
RP11-415C15.2
hsa-miR-133b
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512873
Biotype: lincRNA
Gene id: ENSG00000249699
Gene Name: RP11-415C15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-600
0.026
9
RP11-317M11.1
hsa-miR-133b
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506950
Biotype: sense_intronic
Gene id: ENSG00000249341
Gene Name: RP11-317M11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1330-1350
0.021
2
6mer
1123-1143
0.005
1
XLOC_009649
hsa-miR-133b
0.717
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020316
Biotype: transcript isomorph
Gene id: XLOC_009649
Gene Name: XLOC_009649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-258
0.015
0
6mer
138-156
0.011
1
NOP14-AS1
hsa-miR-133b
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515194
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-482
0.016
0
6mer
3838-3847
0.007
0
6mer
705-716
0.003
1
XLOC_011155
hsa-miR-133b
0.717
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023286
Biotype: transcript isomorph
Gene id: XLOC_011155
Gene Name: XLOC_011155
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-89
0.026
0
LINC01096
hsa-miR-133b
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501050
Biotype: lincRNA
Gene id: ENSG00000246095
Gene Name: LINC01096
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
52-60
0.009
4
6mer
324-341
0.008
5
6mer
97-120
0.007
1
6mer
528-551
0.002
1
XLOC_012017
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024736
Biotype: transcript isomorph
Gene id: XLOC_012017
Gene Name: XLOC_012017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2786-2809
0.014
7
6mer
941-964
0.006
6
7mer
885-897
0.005
2
6mer
2372-2398
0.002
0
XLOC_014080
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029138
Biotype: transcript isomorph
Gene id: XLOC_014080
Gene Name: XLOC_014080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-117
0.020
2
6mer
1044-1059
0.006
3
SOX2-OT
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597828
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-268
0.026
6
XLOC_005595
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012067
Biotype: transcript isomorph
Gene id: XLOC_005595
Gene Name: XLOC_005595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4989-5009
0.011
0
7mer
5013-5028
0.006
Not Conserved
6mer
4625-4633
0.003
0
6mer
600-604
0.003
1
6mer
653-679
0.003
1
6mer
3079-3098
0.001
1
XLOC_010622
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021656
Biotype: transcript isomorph
Gene id: XLOC_010622
Gene Name: XLOC_010622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6125-6147
0.013
1
6mer
5544-5559
0.005
2
6mer
5413-5417
0.003
1
6mer
1863-1868
0.002
1
6mer
3738-3764
0.002
1
6mer
2634-2650
0.001
1
PAX8-AS1
hsa-miR-133b
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2619-2632
0.010
1
7mer
1372-1393
0.004
2
6mer
5076-5098
0.003
3
6mer
10207-10211
0.002
3
6mer
8356-8374
0.002
7
6mer
1585-1603
0.002
2
6mer
6130-6142
0.001
0
6mer
3962-3989
0.001
0
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