LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
XLOC_012859
hsa-miR-133b
0.726
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026536
Biotype: transcript isomorph
Gene id: XLOC_012859
Gene Name: XLOC_012859
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-78
0.022
2
6mer
589-607
0.004
0
PABPC1L2B-AS1
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000416989
Biotype: antisense
Gene id: ENSG00000226725
Gene Name: PABPC1L2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
690-716
0.015
2
6mer
128-132
0.005
0
6mer
304-308
0.004
1
6mer
657-675
0.003
0
FLJ41278
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535058
Biotype: lincRNA
Gene id: ENSG00000255693
Gene Name: FLJ41278
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3506-3520
0.024
0
6mer
2194-2208
0.003
3
RP11-727A23.10
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530045
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-407
0.019
4
6mer
2265-2288
0.003
0
6mer
639-659
0.003
0
6mer
1369-1386
0.002
Not Conserved
XLOC_003911
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008452
Biotype: transcript isomorph
Gene id: XLOC_003911
Gene Name: XLOC_003911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-556
0.012
2
6mer
32-49
0.008
4
6mer
238-254
0.007
3
LINC00467
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448567
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-64
0.020
0
6mer
350-366
0.007
1
XLOC_001668
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3485-3502
0.012
0
6mer
2698-2723
0.006
1
6mer
5211-5234
0.004
0
6mer
4357-4361
0.003
0
6mer
4728-4745
0.002
Not Conserved
RP11-678G15.2
hsa-miR-133b
0.725
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579509
Biotype: antisense
Gene id: ENSG00000266767
Gene Name: RP11-678G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
973-983
0.021
2
6mer
220-238
0.006
1
XLOC_008024
hsa-miR-133b
0.724
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017001
Biotype: transcript isomorph
Gene id: XLOC_008024
Gene Name: XLOC_008024
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2470-2476
0.024
0
6mer
1601-1605
0.003
1
CTD-3023L14.2
hsa-miR-133b
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518846
Biotype: lincRNA
Gene id: ENSG00000253130
Gene Name: CTD-3023L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-421
0.012
1
6mer
452-460
0.007
3
6mer
438-452
0.007
2
AP004372.1
hsa-miR-133b
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000419440
Biotype: antisense
Gene id: ENSG00000238117
Gene Name: AP004372.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-340
0.026
1
CTB-89H12.4
hsa-miR-133b
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
275-279
0.010
9
7mer
7961-7972
0.008
0
6mer
1997-2017
0.004
12
6mer
4876-4893
0.002
1
6mer
4323-4336
0.002
2
6mer
4870-4874
0.001
0
AC008781.7
hsa-miR-133b
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000422040
Biotype: antisense
Gene id: ENSG00000228737
Gene Name: AC008781.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6-33
0.024
Not Conserved
6mer
224-247
0.002
0
SOX2-OT
hsa-miR-133b
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469278
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-389
0.026
6
RP1-228P16.5
hsa-miR-133b
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547602
Biotype: lincRNA
Gene id: ENSG00000257955
Gene Name: RP1-228P16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-405
0.026
Not Conserved
XLOC_013015
hsa-miR-133b
0.722
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026959
Biotype: transcript isomorph
Gene id: XLOC_013015
Gene Name: XLOC_013015
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-101
0.026
Not Conserved
NEAT1
hsa-miR-133b
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12315-12332
0.008
2
8mer
4577-4598
0.005
1
6mer
481-502
0.003
1
6mer
791-813
0.003
1
6mer
13088-13092
0.002
0
8mer+mismatch
152-171
0.002
0
6mer
20089-20093
0.002
0
6mer
3029-3047
0.002
1
LBX1-AS1
hsa-miR-133b
0.722
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430651
Biotype: antisense
Gene id: ENSG00000227128
Gene Name: LBX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-158
0.015
1
6mer
2511-2515
0.012
7
EIF3J-AS1
hsa-miR-133b
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559356
Biotype: lincRNA
Gene id: ENSG00000179523
Gene Name: EIF3J-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-60
0.023
Not Conserved
6mer
209-228
0.003
1
LINC00550
hsa-miR-133b
0.721
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3074-3083
0.007
1
7mer
2144-2159
0.007
1
6mer
560-572
0.006
1
6mer
1254-1278
0.003
1
6mer
1145-1163
0.002
1
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