LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
CTD-2090I13.1
hsa-miR-133b
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436377
Biotype: lincRNA
Gene id: ENSG00000234277
Gene Name: CTD-2090I13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-250
0.021
1
6mer
384-397
0.007
1
RP3-340N1.2
hsa-miR-133b
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
274-299
0.014
1
6mer
321-342
0.011
1
6mer
1714-1730
0.003
0
GS1-279B7.1
hsa-miR-133b
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562817
Biotype: lincRNA
Gene id: ENSG00000261024
Gene Name: GS1-279B7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-158
0.011
0
7mer
162-182
0.009
0
7mer
186-201
0.008
0
AC010987.6
hsa-miR-133b
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457448
Biotype: lincRNA
Gene id: ENSG00000237013
Gene Name: AC010987.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
669-693
0.020
3
6mer
88-92
0.008
1
SLC25A21-AS1
hsa-miR-133b
0.737
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556667
Biotype: antisense
Gene id: ENSG00000258708
Gene Name: SLC25A21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1117-1123
0.020
1
6mer
1416-1438
0.004
1
6mer
1037-1058
0.004
1
EGFLAM-AS2
hsa-miR-133b
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514377
Biotype: antisense
Gene id: ENSG00000248572
Gene Name: EGFLAM-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-370
0.028
2
CTD-2036P10.3
hsa-miR-133b
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500850
Biotype: lincRNA
Gene id: ENSG00000246283
Gene Name: CTD-2036P10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1614-1618
0.008
4
6mer
1841-1867
0.006
1
6mer
1714-1718
0.005
1
6mer
1729-1733
0.005
1
6mer
1719-1723
0.004
0
XLOC_000361
hsa-miR-133b
0.737
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001115
Biotype: transcript isomorph
Gene id: XLOC_000361
Gene Name: XLOC_000361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
239-243
0.018
1
6mer
261-278
0.010
0
RP11-662I13.2
hsa-miR-133b
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546353
Biotype: antisense
Gene id: ENSG00000255921
Gene Name: RP11-662I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-345
0.014
0
6mer
680-691
0.007
1
6mer
326-352
0.006
2
XLOC_005621
hsa-miR-133b
0.736
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012090
Biotype: transcript isomorph
Gene id: XLOC_005621
Gene Name: XLOC_005621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1106
0.025
1
6mer
1418-1436
0.003
0
XLOC_007103
hsa-miR-133b
0.736
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015026
Biotype: transcript isomorph
Gene id: XLOC_007103
Gene Name: XLOC_007103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-627
0.023
0
6mer
227-248
0.005
1
XLOC_010183
hsa-miR-133b
0.736
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020904
Biotype: transcript isomorph
Gene id: XLOC_010183
Gene Name: XLOC_010183
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-222
0.027
0
XLOC_003567
hsa-miR-133b
0.735
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007360
Biotype: transcript isomorph
Gene id: XLOC_003567
Gene Name: XLOC_003567
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-169
0.021
0
6mer
81-92
0.007
1
XLOC_000650
hsa-miR-133b
0.735
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001363
Biotype: transcript isomorph
Gene id: XLOC_000650
Gene Name: XLOC_000650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-346
0.027
0
AC090505.6
hsa-miR-133b
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423318
Biotype: lincRNA
Gene id: ENSG00000237222
Gene Name: AC090505.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-267
0.021
0
7mer
3006-3029
0.004
1
6mer
891-902
0.003
Not Conserved
RP1-309F20.3
hsa-miR-133b
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000605534
Biotype: antisense
Gene id: ENSG00000225806
Gene Name: RP1-309F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-552
0.027
1
LINC01239
hsa-miR-133b
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436786
Biotype: lincRNA
Gene id: ENSG00000234840
Gene Name: LINC01239
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-37
0.017
3
6mer
1972-1976
0.006
0
6mer
1748-1764
0.003
1
6mer
1225-1244
0.002
1
LINC00467
hsa-miR-133b
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000534914
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-81
0.021
0
6mer
210-226
0.006
1
AP001042.1
hsa-miR-133b
0.733
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416842
Biotype: lincRNA
Gene id: ENSG00000229986
Gene Name: AP001042.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-99
0.027
1
LINC01206
hsa-miR-133b
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2927-2942
0.017
0
6mer
1117-1128
0.003
1
6mer
8220-8245
0.003
4
7mer
6917-6935
0.002
1
6mer
7144-7156
0.002
1
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