LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
CTD-2368P22.1
hsa-miR-133b
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000546949
Biotype: antisense
Gene id: ENSG00000176593
Gene Name: CTD-2368P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2154-2163
0.022
1
6mer
1133-1153
0.003
1
6mer
845-849
0.003
0
CTD-2036P10.6
hsa-miR-133b
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617465
Biotype: antisense
Gene id: ENSG00000274403
Gene Name: CTD-2036P10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-109
0.028
1
XXyac-YX155B6.5
hsa-miR-133b
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000599864
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-835
0.025
0
6mer
139-164
0.004
Not Conserved
CIRBP-AS1
hsa-miR-133b
0.745
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585832
Biotype: antisense
Gene id: ENSG00000267493
Gene Name: CIRBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
706-726
0.028
1
RP11-423J7.1
hsa-miR-133b
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505586
Biotype: lincRNA
Gene id: ENSG00000250704
Gene Name: RP11-423J7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
53-72
0.028
1
XLOC_009668
hsa-miR-133b
0.744
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021074
Biotype: transcript isomorph
Gene id: XLOC_009668
Gene Name: XLOC_009668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
669-692
0.010
1
7mer
450-474
0.010
0
6mer
1446-1450
0.008
3
SOX2-OT
hsa-miR-133b
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595313
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-267
0.028
6
RP11-488I20.3
hsa-miR-133b
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569242
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-69
0.016
1
6mer
2750-2754
0.006
0
6mer
2357-2378
0.005
0
RP11-733O18.1
hsa-miR-133b
0.742
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444185
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-44
0.028
1
RP5-842K16.2
hsa-miR-133b
0.742
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566521
Biotype: antisense
Gene id: ENSG00000261629
Gene Name: RP5-842K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-412
0.028
1
EIF3J-AS1
hsa-miR-133b
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558323
Biotype: lincRNA
Gene id: ENSG00000179523
Gene Name: EIF3J-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-40
0.023
Not Conserved
6mer
189-208
0.004
1
LINC00624
hsa-miR-133b
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619867
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2081-2108
0.022
3
6mer
819-823
0.003
2
6mer
2688-2706
0.003
Not Conserved
XLOC_013931
hsa-miR-133b
0.741
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-97
0.017
0
6mer
681-699
0.011
0
RP11-93G5.1
hsa-miR-133b
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4805-4810
0.018
1
6mer
4828-4846
0.006
1
7mer
3372-3398
0.003
0
6mer
3268-3282
0.002
0
KDM4A-AS1
hsa-miR-133b
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453015
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-32
0.017
0
8mer
242-260
0.011
0
RP11-605F22.2
hsa-miR-133b
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561094
Biotype: lincRNA
Gene id: ENSG00000259235
Gene Name: RP11-605F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-474
0.028
0
PROX1-AS1
hsa-miR-133b
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3807-3833
0.019
0
6mer
4461-4483
0.003
3
6mer
4315-4325
0.003
3
6mer
1030-1048
0.002
2
XLOC_002087
hsa-miR-133b
0.739
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004246
Biotype: transcript isomorph
Gene id: XLOC_002087
Gene Name: XLOC_002087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-64
0.028
5
AC109826.1
hsa-miR-133b
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419865
Biotype: lincRNA
Gene id: ENSG00000226791
Gene Name: AC109826.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-395
0.023
3
6mer
1120-1124
0.005
0
XLOC_003007
hsa-miR-133b
0.739
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007086
Biotype: transcript isomorph
Gene id: XLOC_003007
Gene Name: XLOC_003007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-223
0.028
0
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