LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
AC079466.1
hsa-miR-133b
0.769
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3643-3668
0.013
1
7mer
1419-1445
0.010
0
6mer
1820-1836
0.006
1
6mer
2869-2892
0.001
0
RP11-1081M5.2
hsa-miR-133b
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000566892
Biotype: lincRNA
Gene id: ENSG00000260484
Gene Name: RP11-1081M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1006-1029
0.030
1
RNF157-AS1
hsa-miR-133b
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590137
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-653
0.030
9
DGCR9
hsa-miR-133b
0.768
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609630
Biotype: lincRNA
Gene id: ENSG00000273032
Gene Name: DGCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2157-2174
0.017
1
6mer
115-132
0.008
0
6mer
2167-2184
0.005
0
SBF2-AS1
hsa-miR-133b
0.768
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498905
Biotype: antisense
Gene id: ENSG00000246273
Gene Name: SBF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-462
0.008
2
7mer
1197-1218
0.008
0
6mer
2478-2491
0.005
1
6mer
2641-2668
0.005
1
7mer
1283-1304
0.004
3
6mer
1379-1401
0.001
3
RP11-385J1.2
hsa-miR-133b
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451742
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
554-573
0.030
1
SBF2-AS1
hsa-miR-133b
0.767
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_036485.1
Biotype: antisense
Gene id: NR_036485.1 (gene)
Gene Name: SBF2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-461
0.008
2
7mer
1196-1217
0.008
0
6mer
2477-2490
0.005
1
6mer
2640-2667
0.005
1
7mer
1282-1303
0.004
3
6mer
1378-1400
0.001
3
RP11-69I8.2
hsa-miR-133b
0.766
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1725-1739
0.014
1
6mer
1371-1388
0.011
1
6mer
1401-1427
0.005
1
RP11-96D1.9
hsa-miR-133b
0.766
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575953
Biotype: sense_intronic
Gene id: ENSG00000262514
Gene Name: RP11-96D1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
628-643
0.026
0
6mer
375-379
0.004
0
RP11-360D2.1
hsa-miR-133b
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417563
Biotype: antisense
Gene id: ENSG00000232113
Gene Name: RP11-360D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-145
0.021
4
6mer
41-67
0.009
4
XLOC_001199
hsa-miR-133b
0.766
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4331-4357
0.021
0
6mer
4985-5007
0.004
3
6mer
4839-4849
0.003
3
6mer
1554-1572
0.002
2
RP11-317L10.1
hsa-miR-133b
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608068
Biotype: lincRNA
Gene id: ENSG00000272554
Gene Name: RP11-317L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-316
0.017
1
6mer
434-455
0.013
8
RP11-493K23.4
hsa-miR-133b
0.765
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454388
Biotype: antisense
Gene id: ENSG00000231963
Gene Name: RP11-493K23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-478
0.017
2
6mer
1036-1040
0.005
0
6mer
860-864
0.005
1
6mer
493-511
0.003
0
XLOC_005221
hsa-miR-133b
0.764
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011277
Biotype: transcript isomorph
Gene id: XLOC_005221
Gene Name: XLOC_005221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-624
0.030
0
RP11-557H15.3
hsa-miR-133b
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422736
Biotype: lincRNA
Gene id: ENSG00000231971
Gene Name: RP11-557H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-152
0.030
4
RP11-260G13.1
hsa-miR-133b
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549515
Biotype: lincRNA
Gene id: ENSG00000258107
Gene Name: RP11-260G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-638
0.030
6
RP11-474N24.6
hsa-miR-133b
0.762
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609787
Biotype: lincRNA
Gene id: ENSG00000272799
Gene Name: RP11-474N24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-193
0.016
1
7mer
144-158
0.013
1
AC092669.3
hsa-miR-133b
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428647
Biotype: lincRNA
Gene id: ENSG00000232164
Gene Name: AC092669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-36
0.013
1
7mer
1242-1247
0.011
0
6mer
1196-1212
0.004
0
6mer
1428-1452
0.002
Not Conserved
RP11-501O2.3
hsa-miR-133b
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470219
Biotype: lincRNA
Gene id: ENSG00000244650
Gene Name: RP11-501O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-141
0.025
3
6mer
210-232
0.004
1
INHBA-AS1
hsa-miR-133b
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422822
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-717
0.015
3
7mer
1228-1247
0.006
1
6mer
337-355
0.006
2
6mer
1534-1553
0.003
Not Conserved
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