LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
XLOC_007464
hsa-miR-133b
0.776
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015717
Biotype: transcript isomorph
Gene id: XLOC_007464
Gene Name: XLOC_007464
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-424
0.021
2
7mer
331-336
0.010
0
RP1-125N5.2
hsa-miR-133b
0.776
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436492
Biotype: lincRNA
Gene id: ENSG00000235815
Gene Name: RP1-125N5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-232
0.016
1
6mer
192-218
0.006
1
6mer
338-349
0.005
1
6mer
281-306
0.004
1
XLOC_000269
hsa-miR-133b
0.776
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000242
Biotype: transcript isomorph
Gene id: XLOC_000269
Gene Name: XLOC_000269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1639
0.018
0
7mer
42-47
0.013
1
LINC01125
hsa-miR-133b
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596740
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-687
0.031
5
CECR3
hsa-miR-133b
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428828
Biotype: lincRNA
Gene id: ENSG00000241832
Gene Name: CECR3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1049-1073
0.021
3
6mer
1336-1357
0.007
8
6mer
1044-1065
0.002
1
6mer
942-962
0.001
0
RP5-872K7.7
hsa-miR-133b
0.774
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425746
Biotype: antisense
Gene id: ENSG00000228604
Gene Name: RP5-872K7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-193
0.025
2
6mer
146-173
0.006
2
RP3-325F22.5
hsa-miR-133b
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607749
Biotype: antisense
Gene id: ENSG00000272189
Gene Name: RP3-325F22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1265-1282
0.015
1
6mer
1868-1872
0.010
5
6mer
1434-1453
0.005
3
RP11-63M22.2
hsa-miR-133b
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569274
Biotype: antisense
Gene id: ENSG00000260465
Gene Name: RP11-63M22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1092-1114
0.022
1
6mer
362-385
0.009
7
RP11-44N12.5
hsa-miR-133b
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606778
Biotype: lincRNA
Gene id: ENSG00000271930
Gene Name: RP11-44N12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-341
0.031
5
XLOC_001331
hsa-miR-133b
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002811
Biotype: transcript isomorph
Gene id: XLOC_001331
Gene Name: XLOC_001331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-251
0.028
2
6mer
266-285
0.003
2
RP11-119D9.1
hsa-miR-133b
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533670
Biotype: lincRNA
Gene id: ENSG00000251637
Gene Name: RP11-119D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
347-374
0.021
Not Conserved
6mer
533-547
0.010
2
CTD-2154I11.2
hsa-miR-133b
0.772
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513235
Biotype: antisense
Gene id: ENSG00000250240
Gene Name: CTD-2154I11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-540
0.031
0
XLOC_004924
hsa-miR-133b
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-651
0.016
4
6mer
4709-4723
0.006
8
7mer
2522-2544
0.003
1
6mer
4024-4034
0.002
1
6mer
1994-2011
0.002
0
6mer
1460-1483
0.002
1
6mer
8307-8323
0.001
Not Conserved
AC099668.5
hsa-miR-133b
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000563780
Biotype: retained_intron
Gene id: ENSG00000259970
Gene Name: AC099668.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-128
0.023
4
7mer
73-89
0.008
3
AC074391.1
hsa-miR-133b
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606556
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-242
0.030
0
SMIM2-AS1
hsa-miR-133b
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618753
Biotype: antisense
Gene id: ENSG00000227258
Gene Name: SMIM2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1974-1990
0.023
3
6mer
1444-1462
0.004
3
6mer
1652-1672
0.004
1
RP11-513G11.4
hsa-miR-133b
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000415869
Biotype: lincRNA
Gene id: ENSG00000225742
Gene Name: RP11-513G11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-139
0.016
1
6mer
104-108
0.008
3
6mer
114-135
0.007
3
XLOC_006794
hsa-miR-133b
0.770
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1459-1485
0.012
1
6mer
444-448
0.008
1
6mer
776-780
0.007
1
6mer
361-377
0.004
Not Conserved
CTD-2154I11.2
hsa-miR-133b
0.770
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512486
Biotype: antisense
Gene id: ENSG00000250240
Gene Name: CTD-2154I11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-764
0.030
0
RP11-587P21.2
hsa-miR-133b
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546710
Biotype: lincRNA
Gene id: ENSG00000257893
Gene Name: RP11-587P21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
660-670
0.017
3
6mer
25-41
0.013
7
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