LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
AP000696.2
hsa-miR-133b
0.783
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000457669
Biotype: lincRNA
Gene id: ENSG00000231324
Gene Name: AP000696.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-84
0.026
0
6mer
1099-1118
0.006
1
XLOC_010212
hsa-miR-133b
0.783
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020940
Biotype: transcript isomorph
Gene id: XLOC_010212
Gene Name: XLOC_010212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3446-3465
0.027
1
6mer
3459-3463
0.005
0
LINC01347
hsa-miR-133b
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435793
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
389-393
0.017
1
6mer
121-137
0.014
1
XLOC_012200
hsa-miR-133b
0.782
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025387
Biotype: transcript isomorph
Gene id: XLOC_012200
Gene Name: XLOC_012200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-82
0.026
2
6mer
26-52
0.006
1
RP11-15H20.6
hsa-miR-133b
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598386
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-114
0.032
1
XLOC_005479
hsa-miR-133b
0.781
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012608
Biotype: transcript isomorph
Gene id: XLOC_005479
Gene Name: XLOC_005479
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2117-2140
0.032
1
RP3-333B15.4
hsa-miR-133b
0.781
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564051
Biotype: lincRNA
Gene id: ENSG00000260202
Gene Name: RP3-333B15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1944-1964
0.022
1
7mer
1283-1288
0.005
0
6mer
702-706
0.004
1
XLOC_006756
hsa-miR-133b
0.781
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014487
Biotype: transcript isomorph
Gene id: XLOC_006756
Gene Name: XLOC_006756
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1935-1954
0.027
1
6mer
1494-1517
0.004
5
XLOC_004612
hsa-miR-133b
0.780
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010145
Biotype: transcript isomorph
Gene id: XLOC_004612
Gene Name: XLOC_004612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-79
0.031
5
NAV2-AS5
hsa-miR-133b
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-384
0.013
Not Conserved
8mer
2630-2636
0.011
0
7mer
2766-2790
0.007
0
RP11-753H16.3
hsa-miR-133b
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550474
Biotype: antisense
Gene id: ENSG00000258137
Gene Name: RP11-753H16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-346
0.018
1
6mer
396-423
0.009
5
6mer
147-173
0.004
0
RP11-540O11.8
hsa-miR-133b
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000624853
Biotype: sense_intronic
Gene id: ENSG00000280036
Gene Name: RP11-540O11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
817-823
0.028
6
6mer
856-871
0.003
5
CASC7
hsa-miR-133b
0.779
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9318-9323
0.024
6
6mer
2101-2117
0.003
8
6mer
4806-4833
0.003
3
6mer
4225-4248
0.001
1
RP11-308N19.3
hsa-miR-133b
0.778
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446206
Biotype: lincRNA
Gene id: ENSG00000237062
Gene Name: RP11-308N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-559
0.031
4
AC145110.1
hsa-miR-133b
0.778
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517491
Biotype: lincRNA
Gene id: ENSG00000253490
Gene Name: AC145110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1910-1929
0.027
1
6mer
1469-1492
0.005
5
XLOC_003450
hsa-miR-133b
0.778
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007980
Biotype: transcript isomorph
Gene id: XLOC_003450
Gene Name: XLOC_003450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
23-48
0.018
0
6mer
125-129
0.014
0
RP3-412A9.17
hsa-miR-133b
0.778
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16234-16252
0.008
Not Conserved
8mer
7919-7941
0.007
1
6mer
16458-16480
0.003
0
7mer
12446-12472
0.003
1
6mer
937-957
0.002
0
6mer
801-818
0.002
0
6mer
2107-2128
0.002
1
6mer
10586-10604
0.001
1
6mer
11601-11623
0.001
0
6mer
7880-7899
0.001
1
LINC00323
hsa-miR-133b
0.777
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441268
Biotype: antisense
Gene id: ENSG00000226496
Gene Name: LINC00323
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-28
0.024
0
6mer
1674-1701
0.007
3
CTB-92J24.3
hsa-miR-133b
0.777
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596326
Biotype: antisense
Gene id: ENSG00000269289
Gene Name: CTB-92J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1280-1301
0.021
0
7mer
1216-1234
0.010
0
XLOC_002690
hsa-miR-133b
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006078
Biotype: transcript isomorph
Gene id: XLOC_002690
Gene Name: XLOC_002690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-486
0.020
0
6mer
1598-1617
0.007
2
6mer
536-561
0.004
1
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