LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
LINC01185
hsa-miR-133b
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452343
Biotype: lincRNA
Gene id: ENSG00000228414
Gene Name: LINC01185
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1601-1624
0.022
0
6mer
279-299
0.008
6
6mer
945-969
0.002
Not Conserved
RP11-348F1.2
hsa-miR-133b
0.790
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000418775
Biotype: lincRNA
Gene id: ENSG00000226530
Gene Name: RP11-348F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
307-327
0.032
1
LINC01125
hsa-miR-133b
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597654
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
573-585
0.032
5
RP11-423P10.2
hsa-miR-133b
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606229
Biotype: sense_intronic
Gene id: ENSG00000272054
Gene Name: RP11-423P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2431-2451
0.014
3
6mer
3612-3636
0.007
5
6mer
528-542
0.003
1
6mer
847-871
0.003
0
6mer
568-581
0.002
1
6mer
1635-1658
0.002
1
6mer
1797-1820
0.001
1
6mer
1858-1862
0.001
1
RP11-298O21.3
hsa-miR-133b
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470523
Biotype: lincRNA
Gene id: ENSG00000244706
Gene Name: RP11-298O21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-302
0.032
1
LINC01362
hsa-miR-133b
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452901
Biotype: lincRNA
Gene id: ENSG00000230817
Gene Name: LINC01362
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1454-1473
0.019
0
7mer
42-47
0.013
1
DOCK4-AS1
hsa-miR-133b
0.789
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452714
Biotype: antisense
Gene id: ENSG00000225572
Gene Name: DOCK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1487-1514
0.015
5
7mer
396-412
0.014
1
6mer
1665-1682
0.003
0
XLOC_011068
hsa-miR-133b
0.789
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022787
Biotype: transcript isomorph
Gene id: XLOC_011068
Gene Name: XLOC_011068
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
13-24
0.023
9
7mer
276-294
0.009
0
SRP54-AS1
hsa-miR-133b
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556355
Biotype: antisense
Gene id: ENSG00000258704
Gene Name: SRP54-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-288
0.032
0
AC145110.1
hsa-miR-133b
0.788
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523123
Biotype: lincRNA
Gene id: ENSG00000253490
Gene Name: AC145110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1436-1455
0.026
1
6mer
995-1018
0.006
5
RP11-70L8.4
hsa-miR-133b
0.787
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000581788
Biotype: antisense
Gene id: ENSG00000265194
Gene Name: RP11-70L8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-618
0.025
2
6mer
70-93
0.004
0
6mer
2511-2529
0.003
0
LINC01361
hsa-miR-133b
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452834
Biotype: lincRNA
Gene id: ENSG00000236268
Gene Name: LINC01361
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-673
0.025
1
6mer
1011-1036
0.004
1
6mer
696-714
0.003
0
LINC01125
hsa-miR-133b
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445382
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-725
0.032
5
XLOC_014255
hsa-miR-133b
0.786
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029603
Biotype: transcript isomorph
Gene id: XLOC_014255
Gene Name: XLOC_014255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-356
0.032
1
RAMP2-AS1
hsa-miR-133b
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589716
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1231-1253
0.032
1
RAMP2-AS1
hsa-miR-133b
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_024462.1
Biotype: antisense
Gene id: NR_024462.1 (gene)
Gene Name: RAMP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
942-964
0.032
1
CTD-2081C10.1
hsa-miR-133b
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511953
Biotype: lincRNA
Gene id: ENSG00000250447
Gene Name: CTD-2081C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-321
0.032
1
RP11-475C16.2
hsa-miR-133b
0.784
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436953
Biotype: lincRNA
Gene id: ENSG00000237312
Gene Name: RP11-475C16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-366
0.025
3
6mer
7-12
0.007
0
RP11-620J15.4
hsa-miR-133b
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619560
Biotype: antisense
Gene id: ENSG00000273805
Gene Name: RP11-620J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1014-1027
0.028
4
6mer
151-162
0.003
1
RP11-16K12.1
hsa-miR-133b
0.783
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000316148
Biotype: antisense
Gene id: ENSG00000177699
Gene Name: RP11-16K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-719
0.020
2
7mer
365-385
0.005
0
6mer
1683-1703
0.004
0
6mer
1467-1491
0.003
0
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