LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
AL136419.6
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565988
Biotype: retained_intron
Gene id: ENSG00000260669
Gene Name: AL136419.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
731-751
0.033
5
RP11-554D15.4
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421318
Biotype: lincRNA
Gene id: ENSG00000224583
Gene Name: RP11-554D15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-385
0.023
5
6mer
35-52
0.006
3
6mer
278-291
0.005
0
RP11-169F17.1
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581862
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-189
0.021
1
6mer
3-17
0.006
0
6mer
351-359
0.006
0
RP11-902B17.1
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500036
Biotype: antisense
Gene id: ENSG00000247287
Gene Name: RP11-902B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4267-4289
0.012
3
6mer
761-779
0.004
1
6mer
505-532
0.003
1
6mer
2670-2687
0.003
4
6mer
1969-1993
0.003
3
6mer
3664-3683
0.003
2
6mer
671-694
0.003
1
6mer
2340-2344
0.002
1
XLOC_011306
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023266
Biotype: transcript isomorph
Gene id: XLOC_011306
Gene Name: XLOC_011306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-212
0.027
1
6mer
362-371
0.006
1
RP11-245A18.1
hsa-miR-133b
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522087
Biotype: lincRNA
Gene id: ENSG00000254000
Gene Name: RP11-245A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-165
0.033
1
CTB-58E17.3
hsa-miR-133b
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000618407
Biotype: antisense
Gene id: ENSG00000275532
Gene Name: CTB-58E17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
309-322
0.033
2
LINC00929
hsa-miR-133b
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557523
Biotype: lincRNA
Gene id: ENSG00000259150
Gene Name: LINC00929
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-500
0.033
0
RP11-7N14.1
hsa-miR-133b
0.798
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544959
Biotype: antisense
Gene id: ENSG00000256403
Gene Name: RP11-7N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-93
0.022
3
6mer
144-165
0.011
6
SOX2-OT
hsa-miR-133b
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498731
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-194
0.026
6
7mer
2302-2320
0.005
1
6mer
2428-2448
0.002
2
XLOC_006786
hsa-miR-133b
0.796
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
39-65
0.018
0
6mer
486-490
0.015
0
XLOC_004254
hsa-miR-133b
0.795
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009838
Biotype: transcript isomorph
Gene id: XLOC_004254
Gene Name: XLOC_004254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-208
0.018
2
7mer
387-411
0.009
1
6mer
791-808
0.005
1
LINC01361
hsa-miR-133b
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421931
Biotype: lincRNA
Gene id: ENSG00000236268
Gene Name: LINC01361
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-626
0.026
1
6mer
964-989
0.004
1
6mer
649-667
0.003
0
RP13-884E18.4
hsa-miR-133b
0.795
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510922
Biotype: lincRNA
Gene id: ENSG00000250777
Gene Name: RP13-884E18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-352
0.033
1
XLOC_007992
hsa-miR-133b
0.795
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017180
Biotype: transcript isomorph
Gene id: XLOC_007992
Gene Name: XLOC_007992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-197
0.033
1
RP11-266O8.1
hsa-miR-133b
0.794
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000543286
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1798-1823
0.015
1
7mer
1857-1871
0.013
1
6mer
1833-1847
0.005
1
XLOC_002368
hsa-miR-133b
0.794
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2112-2126
0.028
6
6mer
914-926
0.002
Not Conserved
6mer
1283-1296
0.002
0
XLOC_000695
hsa-miR-133b
0.793
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-397
0.017
2
7mer
361-379
0.009
1
6mer
637-649
0.003
1
6mer
1948-1968
0.002
0
6mer
1492-1506
0.002
1
RP11-62F24.1
hsa-miR-133b
0.791
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439447
Biotype: antisense
Gene id: ENSG00000230694
Gene Name: RP11-62F24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-191
0.028
2
6mer
185-208
0.004
0
RP11-219B4.7
hsa-miR-133b
0.791
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000566000
Biotype: antisense
Gene id: ENSG00000260493
Gene Name: RP11-219B4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
945-957
0.014
3
7mer
754-767
0.009
1
7mer
741-767
0.006
0
6mer
404-417
0.002
0
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