LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
XLOC_009026
hsa-miR-133b
0.812
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019822
Biotype: transcript isomorph
Gene id: XLOC_009026
Gene Name: XLOC_009026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-133
0.019
0
6mer
216-229
0.015
0
CTA-228A9.4
hsa-miR-133b
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
875-895
0.007
1
6mer
19815-19838
0.004
Not Conserved
6mer
580-600
0.004
1
6mer
20046-20058
0.004
1
7mer
12754-12779
0.003
2
7mer
3348-3373
0.003
1
6mer
18969-18993
0.002
0
6mer
6167-6187
0.002
1
6mer
17091-17115
0.002
0
6mer
10594-10621
0.001
0
6mer
2202-2218
0.001
1
6mer
10648-10669
0.001
0
6mer
14201-14219
0.001
Not Conserved
6mer
10762-10775
0.001
0
RP11-452H21.4
hsa-miR-133b
0.811
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000513207
Biotype: lincRNA
Gene id: ENSG00000251323
Gene Name: RP11-452H21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1466-1490
0.030
1
6mer
895-899
0.004
3
RP11-390N6.1
hsa-miR-133b
0.811
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548384
Biotype: antisense
Gene id: ENSG00000257191
Gene Name: RP11-390N6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.028
1
6mer
263-287
0.007
5
LINC01010
hsa-miR-133b
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456749
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-294
0.024
1
6mer
1403-1407
0.010
6
ALG1L9P
hsa-miR-133b
0.808
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508969
Biotype: processed_transcript
Gene id: ENSG00000248671
Gene Name: ALG1L9P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-139
0.018
Not Conserved
7mer
1719-1744
0.009
0
6mer
1485-1510
0.007
1
RP11-657O9.1
hsa-miR-133b
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473001
Biotype: retained_intron
Gene id: ENSG00000240086
Gene Name: RP11-657O9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-87
0.034
1
RP11-1217F2.15
hsa-miR-133b
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415836
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-436
0.018
1
7mer
526-544
0.016
0
SNHG14
hsa-miR-133b
0.806
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2873-2888
0.021
0
6mer
4482-4497
0.005
5
6mer
5156-5177
0.003
4
6mer
2625-2642
0.003
2
6mer
3762-3785
0.002
1
XLOC_013283
hsa-miR-133b
0.806
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027274
Biotype: transcript isomorph
Gene id: XLOC_013283
Gene Name: XLOC_013283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-58
0.034
0
XLOC_011448
hsa-miR-133b
0.806
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4175-4199
0.016
1
6mer
425-442
0.004
2
6mer
9624-9632
0.003
3
6mer
1406-1419
0.002
1
6mer
3919-3938
0.002
1
6mer
3712-3730
0.001
1
6mer
3589-3603
0.001
2
6mer
7168-7194
0.001
0
6mer
1393-1397
0.001
3
RP11-366F6.2
hsa-miR-133b
0.806
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445330
Biotype: antisense
Gene id: ENSG00000229967
Gene Name: RP11-366F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-192
0.034
1
RP11-366F6.2
hsa-miR-133b
0.805
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000411474
Biotype: antisense
Gene id: ENSG00000229967
Gene Name: RP11-366F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-193
0.034
1
LINC01125
hsa-miR-133b
0.805
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599435
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
677-689
0.034
5
RP11-403N16.2
hsa-miR-133b
0.804
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448475
Biotype: lincRNA
Gene id: ENSG00000232494
Gene Name: RP11-403N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-95
0.019
1
6mer
239-257
0.015
1
AP000688.29
hsa-miR-133b
0.804
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-97
0.021
0
6mer
458-476
0.013
0
PCAT18
hsa-miR-133b
0.803
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579458
Biotype: lincRNA
Gene id: ENSG00000265369
Gene Name: PCAT18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2481-2504
0.020
2
7mer
895-913
0.009
1
7mer
1220-1238
0.004
0
XLOC_010008
hsa-miR-133b
0.803
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021285
Biotype: transcript isomorph
Gene id: XLOC_010008
Gene Name: XLOC_010008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
93-97
0.019
0
6mer
695-699
0.014
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-133b
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2279-2306
0.029
3
6mer
2539-2556
0.005
1
RP11-446H18.5
hsa-miR-133b
0.801
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597514
Biotype: lincRNA
Gene id: ENSG00000239828
Gene Name: RP11-446H18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-290
0.027
1
6mer
578-594
0.006
2
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