LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-458F8.4
hsa-miR-133b
0.818
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2437-2458
0.035
1
XLOC_000741
hsa-miR-133b
0.818
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001425
Biotype: transcript isomorph
Gene id: XLOC_000741
Gene Name: XLOC_000741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1137-1155
0.029
0
6mer
1119-1133
0.007
3
EMC3-AS1
hsa-miR-133b
0.817
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_103821.1
Biotype: antisense
Gene id: NR_103821.1 (gene)
Gene Name: EMC3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4349-4373
0.026
0
6mer
4230-4238
0.003
0
6mer
3838-3860
0.003
Not Conserved
6mer
4007-4023
0.003
0
RP11-95P2.3
hsa-miR-133b
0.817
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573220
Biotype: lincRNA
Gene id: ENSG00000263105
Gene Name: RP11-95P2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Liver Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-205
0.035
3
XLOC_002338
hsa-miR-133b
0.816
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004462
Biotype: transcript isomorph
Gene id: XLOC_002338
Gene Name: XLOC_002338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-275
0.035
1
LINC01005
hsa-miR-133b
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039987.1
Biotype: lincRNA
Gene id: NR_039987.1 (gene)
Gene Name: LINC01005
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2549-2574
0.030
0
6mer
2247-2258
0.005
0
CTD-2620I22.3
hsa-miR-133b
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-633
0.012
1
7mer
3273-3298
0.008
0
6mer
1912-1925
0.004
1
6mer
133-151
0.004
0
6mer
3260-3287
0.003
1
6mer
1161-1180
0.003
1
6mer
2698-2725
0.000
Not Conserved
CH17-264L24.1
hsa-miR-133b
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6421-6438
0.019
0
6mer
459-483
0.007
1
6mer
6011-6015
0.002
0
6mer
6762-6780
0.002
0
6mer
2484-2500
0.002
0
6mer
4793-4811
0.002
0
6mer
5252-5276
0.001
0
XLOC_004366
hsa-miR-133b
0.816
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1185-1211
0.008
0
8mer+wobble
4752-4775
0.006
0
6mer
337-359
0.005
1
7mer
1337-1343
0.005
0
6mer
13050-13075
0.003
0
6mer
10739-10766
0.003
1
6mer
10185-10209
0.002
1
6mer
1639-1655
0.002
0
6mer
7081-7097
0.001
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-133b
0.815
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2955-2982
0.029
3
6mer
3215-3232
0.004
1
6mer
2633-2660
0.002
0
RP11-58O15.1
hsa-miR-133b
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472243
Biotype: lincRNA
Gene id: ENSG00000240777
Gene Name: RP11-58O15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-488
0.030
2
6mer
489-503
0.005
1
RP3-486I3.7
hsa-miR-133b
0.815
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448740
Biotype: lincRNA
Gene id: ENSG00000237021
Gene Name: RP3-486I3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1853
0.018
1
7mer
466-471
0.010
1
6mer
2073-2077
0.008
1
THAP9-AS1
hsa-miR-133b
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504718
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-500
0.035
1
AC124997.1
hsa-miR-133b
0.814
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000422117
Biotype: lincRNA
Gene id: ENSG00000235731
Gene Name: AC124997.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-920
0.025
1
7mer
1296-1301
0.006
0
6mer
522-542
0.005
2
ERVK3-1
hsa-miR-133b
0.814
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2902-2918
0.021
0
6mer
3533-3558
0.012
1
6mer
1886-1907
0.002
0
CTA-342B11.3
hsa-miR-133b
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-543
0.009
1
6mer
7445-7449
0.003
2
6mer
7788-7792
0.002
2
6mer
6495-6516
0.002
1
6mer
18900-18904
0.002
1
6mer
3488-3501
0.002
4
6mer
19639-19659
0.002
1
6mer
18246-18254
0.002
0
6mer
17937-17945
0.002
1
6mer
15370-15381
0.002
0
6mer
17209-17221
0.002
0
6mer
16850-16870
0.001
0
6mer
22893-22916
0.001
Not Conserved
6mer
17209-17226
0.001
0
XLOC_004689
hsa-miR-133b
0.813
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009572
Biotype: transcript isomorph
Gene id: XLOC_004689
Gene Name: XLOC_004689
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-246
0.029
3
6mer
300-314
0.006
0
RP11-796E2.4
hsa-miR-133b
0.812
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5588-5602
0.020
2
7mer
3287-3303
0.004
2
6mer
932-946
0.003
1
6mer
4965-4969
0.003
1
6mer
4266-4270
0.002
0
6mer
3650-3675
0.002
2
XLOC_012720
hsa-miR-133b
0.812
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026369
Biotype: transcript isomorph
Gene id: XLOC_012720
Gene Name: XLOC_012720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2760-2784
0.029
2
6mer
999-1003
0.003
1
6mer
3087-3091
0.003
6
XLOC_013825
hsa-miR-133b
0.812
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028716
Biotype: transcript isomorph
Gene id: XLOC_013825
Gene Name: XLOC_013825
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
129-152
0.035
1
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