LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-99H20.1
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520155
Biotype: lincRNA
Gene id: ENSG00000254123
Gene Name: RP11-99H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-227
0.017
1
7mer
601-613
0.013
2
6mer
216-231
0.006
3
GS1-594A7.3
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000421585
Biotype: antisense
Gene id: ENSG00000225833
Gene Name: GS1-594A7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-251
0.036
1
RP11-138M12.1
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430672
Biotype: lincRNA
Gene id: ENSG00000228704
Gene Name: RP11-138M12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-138
0.020
3
7mer
28-34
0.016
1
RP11-395B7.7
hsa-miR-133b
0.826
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000564977
Biotype: sense_overlapping
Gene id: ENSG00000260336
Gene Name: RP11-395B7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2816-2831
0.010
3
7mer
3368-3392
0.007
1
7mer
728-746
0.006
0
6mer
710-714
0.005
5
6mer
3336-3353
0.004
2
6mer
682-701
0.004
1
XLOC_010123
hsa-miR-133b
0.825
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020213
Biotype: transcript isomorph
Gene id: XLOC_010123
Gene Name: XLOC_010123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1741-1766
0.027
3
6mer
521-525
0.005
3
6mer
2290-2297
0.003
1
RP4-806M20.5
hsa-miR-133b
0.825
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000603095
Biotype: lincRNA
Gene id: ENSG00000270279
Gene Name: RP4-806M20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1311-1316
0.022
4
6mer
313-317
0.010
6
6mer
169-184
0.004
1
RP11-330O11.3
hsa-miR-133b
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608729
Biotype: sense_intronic
Gene id: ENSG00000272914
Gene Name: RP11-330O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-533
0.025
3
7mer
921-937
0.008
1
6mer
1005-1020
0.003
2
AQP4-AS1
hsa-miR-133b
0.824
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578701
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1086-1092
0.027
1
6mer
1967-1984
0.005
1
6mer
1743-1762
0.004
1
RP11-385J1.2
hsa-miR-133b
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000421498
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
364-383
0.036
1
XLOC_005808
hsa-miR-133b
0.824
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012253
Biotype: transcript isomorph
Gene id: XLOC_005808
Gene Name: XLOC_005808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1372
0.034
6
6mer
608-629
0.002
0
RP5-1050D4.3
hsa-miR-133b
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576752
Biotype: antisense
Gene id: ENSG00000262429
Gene Name: RP5-1050D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-208
0.036
3
XLOC_003069
hsa-miR-133b
0.822
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006458
Biotype: transcript isomorph
Gene id: XLOC_003069
Gene Name: XLOC_003069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-780
0.019
0
6mer
2253-2271
0.005
1
8mer
1824-1848
0.004
0
6mer
2015-2025
0.004
1
6mer
976-985
0.003
1
CTA-360L10.1
hsa-miR-133b
0.822
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000494849
Biotype: antisense
Gene id: ENSG00000243193
Gene Name: CTA-360L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-193
0.031
3
6mer
202-219
0.005
1
RP4-568F9.6
hsa-miR-133b
0.822
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457009
Biotype: lincRNA
Gene id: ENSG00000230010
Gene Name: RP4-568F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-185
0.023
0
6mer
1990-2010
0.007
1
6mer
503-529
0.006
1
XLOC_010695
hsa-miR-133b
0.822
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022087
Biotype: transcript isomorph
Gene id: XLOC_010695
Gene Name: XLOC_010695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
911-920
0.036
12
AC092580.4
hsa-miR-133b
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417930
Biotype: lincRNA
Gene id: ENSG00000235576
Gene Name: AC092580.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-64
0.032
2
6mer
79-98
0.003
2
RP13-188A5.1
hsa-miR-133b
0.821
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452532
Biotype: lincRNA
Gene id: ENSG00000227486
Gene Name: RP13-188A5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-201
0.018
0
6mer
321-344
0.012
5
6mer
721-739
0.006
1
XLOC_001669
hsa-miR-133b
0.820
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003871
Biotype: transcript isomorph
Gene id: XLOC_001669
Gene Name: XLOC_001669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-257
0.036
0
CTD-2008P7.1
hsa-miR-133b
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-929
0.031
0
6mer
1056-1060
0.005
1
RP11-186F10.2
hsa-miR-133b
0.819
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546601
Biotype: antisense
Gene id: ENSG00000257761
Gene Name: RP11-186F10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-115
0.031
2
6mer
414-429
0.004
3
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