LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-932O9.4
hsa-miR-133b
0.832
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563502
Biotype: lincRNA
Gene id: ENSG00000259906
Gene Name: RP11-932O9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-59
0.033
1
6mer
86-111
0.004
0
CTD-3080P12.3
hsa-miR-133b
0.832
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512572
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-208
0.034
1
6mer
599-619
0.003
0
AC005281.1
hsa-miR-133b
0.831
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418428
Biotype: lincRNA
Gene id: ENSG00000226690
Gene Name: AC005281.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-682
0.027
1
6mer
219-230
0.010
6
SNHG14
hsa-miR-133b
0.831
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553108
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1288-1303
0.032
0
6mer
1040-1057
0.004
2
RP11-733O18.1
hsa-miR-133b
0.830
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422914
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-44
0.030
1
6mer
597-617
0.006
1
RP11-160E2.16
hsa-miR-133b
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000447506
Biotype: lincRNA
Gene id: ENSG00000236022
Gene Name: RP11-160E2.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-154
0.025
1
6mer
318-336
0.011
1
ZNF625-ZNF20
hsa-miR-133b
0.830
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037802.1
Biotype: sense
Gene id: NR_037802.1 (gene)
Gene Name: ZNF625-ZNF20
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-86
0.021
0
7mer
136-153
0.008
0
6mer
173-177
0.004
0
6mer
3388-3412
0.003
Not Conserved
XLOC_009839
hsa-miR-133b
0.829
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020522
Biotype: transcript isomorph
Gene id: XLOC_009839
Gene Name: XLOC_009839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2118-2123
0.020
3
6mer
50-63
0.009
3
6mer
1896-1920
0.008
7
RP11-160E2.17
hsa-miR-133b
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000439868
Biotype: lincRNA
Gene id: ENSG00000230197
Gene Name: RP11-160E2.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-154
0.025
1
6mer
318-336
0.011
1
RP11-382J12.1
hsa-miR-133b
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518553
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-793
0.036
1
XLOC_008274
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
289-293
0.010
2
6mer
360-364
0.008
2
6mer
571-584
0.005
1
7mer
3638-3658
0.004
0
6mer
4834-4859
0.004
1
6mer
2807-2825
0.004
2
6mer
3902-3925
0.003
1
CERS6-AS1
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425636
Biotype: antisense
Gene id: ENSG00000227617
Gene Name: CERS6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
731-737
0.028
1
6mer
1012-1016
0.003
1
6mer
2098-2123
0.003
1
6mer
1777-1798
0.003
1
FAM95B1
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585417
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-65
0.036
0
FAM95B1
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588217
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-65
0.036
0
FAM95B1
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586842
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-65
0.036
0
RP11-707P20.1
hsa-miR-133b
0.828
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420725
Biotype: lincRNA
Gene id: ENSG00000236513
Gene Name: RP11-707P20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-450
0.027
2
6mer
620-624
0.005
0
6mer
868-884
0.004
0
XLOC_001878
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004039
Biotype: transcript isomorph
Gene id: XLOC_001878
Gene Name: XLOC_001878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-179
0.036
0
RP5-968D22.1
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422548
Biotype: lincRNA
Gene id: ENSG00000228697
Gene Name: RP5-968D22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-50
0.032
2
6mer
209-235
0.004
2
FAM95B1
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586172
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-65
0.036
0
FAM95B1
hsa-miR-133b
0.827
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590254
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-65
0.036
0
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