LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP5-843L14.1
hsa-miR-133b
0.853
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434176
Biotype: lincRNA
Gene id: ENSG00000225657
Gene Name: RP5-843L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-166
0.018
2
7mer
377-392
0.018
3
6mer
78-104
0.004
0
CTD-3222D19.11
hsa-miR-133b
0.853
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597357
Biotype: antisense
Gene id: ENSG00000268309
Gene Name: CTD-3222D19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-167
0.026
2
6mer
402-406
0.009
1
6mer
168-189
0.004
1
RP11-203B9.4
hsa-miR-133b
0.852
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589263
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-310
0.039
8
AC079896.1
hsa-miR-133b
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455845
Biotype: lincRNA
Gene id: ENSG00000231781
Gene Name: AC079896.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-304
0.022
3
7mer
343-365
0.018
2
LINC01291
hsa-miR-133b
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435984
Biotype: lincRNA
Gene id: ENSG00000204792
Gene Name: LINC01291
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-172
0.021
1
7mer
185-198
0.014
1
6mer
311-331
0.005
1
DNM3OS
hsa-miR-133b
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4197-4218
0.024
4
6mer
974-995
0.004
4
6mer
2437-2441
0.004
8
6mer
2199-2210
0.003
6
6mer
2912-2916
0.002
5
6mer
2105-2109
0.002
7
RP11-365P13.5
hsa-miR-133b
0.851
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000620246
Biotype: lincRNA
Gene id: ENSG00000277767
Gene Name: RP11-365P13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-707
0.030
1
6mer
1542-1557
0.006
1
6mer
102-126
0.003
Not Conserved
DNM3OS
hsa-miR-133b
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3849-3870
0.024
4
6mer
626-647
0.005
4
6mer
2089-2093
0.004
8
6mer
1851-1862
0.003
6
6mer
2564-2568
0.002
5
6mer
1757-1761
0.002
7
CTC-459F4.3
hsa-miR-133b
0.850
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592404
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-303
0.039
0
RP11-717I24.1
hsa-miR-133b
0.849
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568289
Biotype: lincRNA
Gene id: ENSG00000260642
Gene Name: RP11-717I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-199
0.035
1
6mer
141-166
0.004
0
PWRN2
hsa-miR-133b
0.849
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3666-3689
0.008
1
6mer
3919-3936
0.007
1
7mer
3313-3327
0.006
0
6mer
847-873
0.005
1
7mer
2949-2970
0.005
0
6mer
2710-2724
0.004
1
6mer
1392-1408
0.002
0
6mer
1269-1273
0.001
Not Conserved
CTB-92J24.3
hsa-miR-133b
0.849
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598914
Biotype: antisense
Gene id: ENSG00000269289
Gene Name: CTB-92J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
810-831
0.023
0
7mer
746-764
0.016
0
CTC-436P18.3
hsa-miR-133b
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503882
Biotype: lincRNA
Gene id: ENSG00000249279
Gene Name: CTC-436P18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
519-538
0.039
1
OGFRP1
hsa-miR-133b
0.848
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415205
Biotype: lincRNA
Gene id: ENSG00000182057
Gene Name: OGFRP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-440
0.039
1
RP11-700H6.4
hsa-miR-133b
0.847
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573301
Biotype: lincRNA
Gene id: ENSG00000262006
Gene Name: RP11-700H6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-397
0.034
3
9mer
138-162
0.005
0
THAP9-AS1
hsa-miR-133b
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509007
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-436
0.039
1
THAP9-AS1
hsa-miR-133b
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512932
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
823-841
0.039
1
LENG8-AS1
hsa-miR-133b
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000416022
Biotype: antisense
Gene id: ENSG00000226696
Gene Name: LENG8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-284
0.039
1
THAP9-AS1
hsa-miR-133b
0.845
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511271
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-379
0.038
1
AC128709.3
hsa-miR-133b
0.845
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438408
Biotype: lincRNA
Gene id: ENSG00000235126
Gene Name: AC128709.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-463
0.038
2
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