LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
RP11-70C1.1
hsa-miR-133b
0.866
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432377
Biotype: antisense
Gene id: ENSG00000225611
Gene Name: RP11-70C1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-716
0.030
1
6mer
430-434
0.004
0
6mer
240-261
0.004
0
6mer
366-390
0.003
0
HOXC-AS2
hsa-miR-133b
0.865
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000604081
Biotype: retained_intron
Gene id: ENSG00000250133
Gene Name: HOXC-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
926-939
0.037
4
6mer
247-272
0.004
2
HSD52
hsa-miR-133b
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623433
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-685
0.032
2
6mer
204-221
0.006
2
6mer
686-699
0.003
0
XLOC_006856
hsa-miR-133b
0.863
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014779
Biotype: transcript isomorph
Gene id: XLOC_006856
Gene Name: XLOC_006856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-105
0.023
1
6mer
400-413
0.017
2
XLOC_001856
hsa-miR-133b
0.863
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004018
Biotype: transcript isomorph
Gene id: XLOC_001856
Gene Name: XLOC_001856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-712
0.038
1
6mer
720-747
0.003
0
SOX2-OT
hsa-miR-133b
0.863
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472856
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-205
0.041
6
CTC-459F4.3
hsa-miR-133b
0.862
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-274
0.041
0
ZNF337-AS1
hsa-miR-133b
0.862
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414393
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4047-4061
0.031
1
6mer
664-690
0.003
1
6mer
3630-3644
0.003
1
6mer
3824-3842
0.003
1
C14orf182
hsa-miR-133b
0.861
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528300
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-220
0.023
1
6mer
72-93
0.007
3
7mer
1488-1503
0.005
2
6mer
2226-2238
0.003
1
6mer
1100-1119
0.002
1
RP11-563P16.1
hsa-miR-133b
0.861
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533459
Biotype: lincRNA
Gene id: ENSG00000254987
Gene Name: RP11-563P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-54
0.036
0
6mer
83-105
0.004
0
HAGLR
hsa-miR-133b
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416928
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3480-3500
0.036
6
6mer
706-728
0.004
5
6mer
2326-2346
0.001
0
RP11-793H13.8
hsa-miR-133b
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547717
Biotype: retained_intron
Gene id: ENSG00000257379
Gene Name: RP11-793H13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
479-505
0.020
12
6mer
1256-1271
0.011
11
6mer
802-814
0.006
9
6mer
428-444
0.004
0
RP4-782L23.1
hsa-miR-133b
0.858
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424725
Biotype: lincRNA
Gene id: ENSG00000231816
Gene Name: RP4-782L23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-528
0.040
6
RP11-588G21.2
hsa-miR-133b
0.857
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501387
Biotype: antisense
Gene id: ENSG00000247131
Gene Name: RP11-588G21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1711-1736
0.032
3
6mer
491-495
0.005
3
6mer
2013-2020
0.003
1
RP11-166A12.1
hsa-miR-133b
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511194
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1033-1057
0.040
3
RP5-1101C3.1
hsa-miR-133b
0.855
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000592542
Biotype: antisense
Gene id: ENSG00000240499
Gene Name: RP5-1101C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-69
0.036
3
6mer
180-201
0.004
1
RP11-298C2.1
hsa-miR-133b
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000620572
Biotype: sense_intronic
Gene id: ENSG00000277539
Gene Name: RP11-298C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-242
0.040
0
RP11-404F10.2
hsa-miR-133b
0.854
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443928
Biotype: antisense
Gene id: ENSG00000228863
Gene Name: RP11-404F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-346
0.040
0
HNF4A-AS1
hsa-miR-133b
0.854
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000452481
Biotype: antisense
Gene id: ENSG00000229005
Gene Name: HNF4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
610-629
0.040
11
RAD51L3-RFFL
hsa-miR-133b
0.854
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2338-2355
0.027
5
6mer
455-459
0.007
6
6mer
3408-3430
0.003
8
6mer
3857-3872
0.002
2
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