LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
SPECC1L-ADORA2A
hsa-miR-133b
0.882
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2474-2480
0.024
8
6mer
446-466
0.007
7
7mer
3094-3103
0.005
4
7mer
3131-3149
0.003
6
6mer
2856-2874
0.002
4
6mer
878-892
0.002
2
RP11-161I2.1
hsa-miR-133b
0.882
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524252
Biotype: antisense
Gene id: ENSG00000187229
Gene Name: RP11-161I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1469-1496
0.036
2
6mer
1371-1378
0.004
1
6mer
434-443
0.003
0
CTA-292E10.9
hsa-miR-133b
0.881
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3891-3912
0.020
9
6mer
24796-24810
0.006
1
7mer
11834-11850
0.005
3
7mer
18045-18071
0.003
1
6mer
11558-11585
0.002
4
6mer
13845-13867
0.002
6
6mer
15572-15585
0.002
1
6mer
13605-13629
0.001
1
6mer
8925-8938
0.001
0
XLOC_007494
hsa-miR-133b
0.881
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016107
Biotype: transcript isomorph
Gene id: XLOC_007494
Gene Name: XLOC_007494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-196
0.043
1
RP5-1121H13.4
hsa-miR-133b
0.881
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431589
Biotype: antisense
Gene id: ENSG00000225458
Gene Name: RP5-1121H13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-207
0.027
2
7mer
370-389
0.016
2
XLOC_010321
hsa-miR-133b
0.880
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021735
Biotype: transcript isomorph
Gene id: XLOC_010321
Gene Name: XLOC_010321
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-336
0.043
2
XLOC_009269
hsa-miR-133b
0.879
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019108
Biotype: transcript isomorph
Gene id: XLOC_009269
Gene Name: XLOC_009269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2081-2104
0.026
3
7mer
46-66
0.013
0
6mer
927-940
0.003
1
6mer
952-977
0.002
0
FAM95B1
hsa-miR-133b
0.878
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592053
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-219
0.031
0
6mer
120-134
0.012
0
RP11-171N4.2
hsa-miR-133b
0.877
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504237
Biotype: lincRNA
Gene id: ENSG00000251283
Gene Name: RP11-171N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-129
0.037
1
6mer
191-208
0.005
3
XLOC_009835
hsa-miR-133b
0.877
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020193
Biotype: transcript isomorph
Gene id: XLOC_009835
Gene Name: XLOC_009835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-419
0.035
1
7mer
870-892
0.007
0
FAM95B1
hsa-miR-133b
0.877
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610972
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-220
0.031
0
6mer
121-135
0.012
0
XLOC_014188
hsa-miR-133b
0.876
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029538
Biotype: transcript isomorph
Gene id: XLOC_014188
Gene Name: XLOC_014188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-102
0.040
0
6mer
1142-1161
0.003
2
AC007319.1
hsa-miR-133b
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412276
Biotype: antisense
Gene id: ENSG00000224063
Gene Name: AC007319.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-334
0.043
1
ADAMTS19-AS1
hsa-miR-133b
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502827
Biotype: antisense
Gene id: ENSG00000249421
Gene Name: ADAMTS19-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
71-90
0.028
9
8mer
158-178
0.015
2
AC144449.1
hsa-miR-133b
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449714
Biotype: antisense
Gene id: ENSG00000231969
Gene Name: AC144449.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-63
0.042
4
RP11-557C18.3
hsa-miR-133b
0.873
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521258
Biotype: antisense
Gene id: ENSG00000253607
Gene Name: RP11-557C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-527
0.035
8
7mer
78-96
0.007
0
RP4-555D20.2
hsa-miR-133b
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3028-3047
0.028
2
7mer
1375-1380
0.005
0
6mer
4161-4182
0.004
2
6mer
376-395
0.004
0
6mer
1904-1922
0.001
0
HSD52
hsa-miR-133b
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000625069
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1015
0.033
2
6mer
204-221
0.006
2
6mer
1016-1029
0.003
0
CTC-459F4.3
hsa-miR-133b
0.869
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587188
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-221
0.042
0
CTBP1-AS2
hsa-miR-133b
0.869
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2035-2061
0.032
1
6mer
1563-1586
0.010
1
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