LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133b


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Gene
miRNA
Score
DIANA Links
XLOC_007035
hsa-miR-133b
0.892
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7144-7150
0.014
0
8mer
7805-7819
0.013
1
7mer
9062-9086
0.006
1
7mer
10699-10726
0.005
0
6mer
728-749
0.003
0
6mer
10108-10119
0.002
0
6mer
11362-11382
0.001
Not Conserved
6mer
11336-11358
0.001
0
C14orf23
hsa-miR-133b
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000552957
Biotype: lincRNA
Gene id: ENSG00000186960
Gene Name: C14orf23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-622
0.030
9
7mer
306-323
0.015
6
RP11-693J15.4
hsa-miR-133b
0.892
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508671
Biotype: antisense
Gene id: ENSG00000266923
Gene Name: RP11-693J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-366
0.037
1
7mer
817-839
0.008
0
CTD-2031P19.5
hsa-miR-133b
0.892
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-279
0.045
5
RP11-574F21.2
hsa-miR-133b
0.892
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442130
Biotype: antisense
Gene id: ENSG00000228606
Gene Name: RP11-574F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-44
0.045
3
WT1-AS
hsa-miR-133b
0.891
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525436
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1102-1111
0.045
2
ZNF561-AS1
hsa-miR-133b
0.891
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
818-840
0.029
0
6mer
2094-2116
0.014
0
6mer
971-995
0.002
Not Conserved
RP11-478P10.1
hsa-miR-133b
0.890
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3748-3754
0.038
1
6mer
1338-1342
0.003
4
6mer
765-773
0.003
1
RP11-478P10.1
hsa-miR-133b
0.890
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510444
Biotype: lincRNA
Gene id: ENSG00000249584
Gene Name: RP11-478P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3752-3758
0.038
1
6mer
1342-1346
0.003
4
6mer
769-777
0.003
1
RP11-631N16.2
hsa-miR-133b
0.890
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8552-8567
0.022
2
8mer
2807-2825
0.014
1
6mer
8291-8303
0.005
0
6mer
8570-8592
0.004
1
DAB1-AS1
hsa-miR-133b
0.889
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591882
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
740-745
0.015
0
7mer
355-367
0.013
3
7mer
695-716
0.011
2
6mer
640-666
0.005
2
C14orf182
hsa-miR-133b
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000529902
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-45
0.031
1
7mer
3560-3575
0.009
2
6mer
566-585
0.003
1
6mer
3153-3163
0.002
0
RP11-753A21.1
hsa-miR-133b
0.888
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561121
Biotype: lincRNA
Gene id: ENSG00000259478
Gene Name: RP11-753A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-49
0.045
8
HCG18
hsa-miR-133b
0.887
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602591
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1846-1855
0.023
0
7mer
499-515
0.012
0
6mer
171-182
0.005
0
6mer
83-101
0.005
Not Conserved
SOX2-OT
hsa-miR-133b
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598867
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-228
0.044
6
RP11-369K17.1
hsa-miR-133b
0.885
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517739
Biotype: lincRNA
Gene id: ENSG00000253619
Gene Name: RP11-369K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-475
0.036
1
6mer
702-716
0.008
5
CTC-339D2.1
hsa-miR-133b
0.885
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507428
Biotype: lincRNA
Gene id: ENSG00000248107
Gene Name: CTC-339D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-85
0.044
1
RP11-316M21.7
hsa-miR-133b
0.884
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443919
Biotype: antisense
Gene id: ENSG00000236308
Gene Name: RP11-316M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-479
0.037
6
6mer
268-284
0.007
3
AC005281.1
hsa-miR-133b
0.884
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424453
Biotype: lincRNA
Gene id: ENSG00000226690
Gene Name: AC005281.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-362
0.044
1
XLOC_007440
hsa-miR-133b
0.883
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016048
Biotype: transcript isomorph
Gene id: XLOC_007440
Gene Name: XLOC_007440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133b
Sequence: uuugguccccuucaaccagcua
MirBase ID: MIMAT0000770
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-209
0.039
1
6mer
453-478
0.005
0
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