LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-132-3p


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Gene
miRNA
Score
DIANA Links
RP11-399F2.2
hsa-miR-132-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507203
Biotype: lincRNA
Gene id: ENSG00000250149
Gene Name: RP11-399F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-375
0.025
2
6mer
298-319
0.006
2
CTD-2227C6.3
hsa-miR-132-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504382
Biotype: lincRNA
Gene id: ENSG00000249857
Gene Name: CTD-2227C6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-257
0.016
1
7mer
11-26
0.015
Not Conserved
LINC-ROR
hsa-miR-132-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000553704
Biotype: lincRNA
Gene id: ENSG00000258609
Gene Name: LINC-ROR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-88
0.017
1
7mer
1834-1851
0.009
1
6mer
884-898
0.004
1
6mer
1818-1833
0.002
1
XLOC_010593
hsa-miR-132-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021644
Biotype: transcript isomorph
Gene id: XLOC_010593
Gene Name: XLOC_010593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-185
0.019
Not Conserved
7mer
1451-1468
0.006
0
6mer
735-748
0.004
0
6mer
1418-1445
0.002
0
RP11-168K11.3
hsa-miR-132-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2585-2606
0.016
2
6mer
2781-2801
0.006
1
6mer
2761-2785
0.006
1
7mer
850-868
0.003
1
LINC-ROR
hsa-miR-132-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_048536.1
Biotype: lincRNA
Gene id: NR_048536.1 (gene)
Gene Name: LINC-ROR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-76
0.017
1
7mer
1822-1839
0.009
1
6mer
872-886
0.004
1
6mer
1806-1821
0.002
1
IL20RB-AS1
hsa-miR-132-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462176
Biotype: antisense
Gene id: ENSG00000249407
Gene Name: IL20RB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-145
0.031
1
RP11-529E15.1
hsa-miR-132-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605962
Biotype: lincRNA
Gene id: ENSG00000272027
Gene Name: RP11-529E15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-118
0.031
Not Conserved
RP11-262H14.3
hsa-miR-132-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438699
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-990
0.027
0
6mer
888-910
0.004
Not Conserved
LINC00886
hsa-miR-132-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472943
Biotype: lincRNA
Gene id: ENSG00000240875
Gene Name: LINC00886
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-123
0.022
2
6mer
624-647
0.004
2
6mer
2318-2340
0.002
1
6mer
1258-1271
0.002
0
XLOC_001313
hsa-miR-132-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004663
Biotype: transcript isomorph
Gene id: XLOC_001313
Gene Name: XLOC_001313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-602
0.031
0
RP11-274H2.5
hsa-miR-132-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567714
Biotype: sense_overlapping
Gene id: ENSG00000261051
Gene Name: RP11-274H2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1974-1989
0.016
1
6mer
1753-1778
0.008
3
6mer
141-156
0.007
1
CTC-459F4.3
hsa-miR-132-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
124-146
0.016
0
6mer
414-426
0.014
0
RP11-206L10.3
hsa-miR-132-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3327-3351
0.031
0
XLOC_002080
hsa-miR-132-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004240
Biotype: transcript isomorph
Gene id: XLOC_002080
Gene Name: XLOC_002080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-119
0.019
1
7mer
1111-1118
0.007
1
6mer
173-183
0.004
1
RP4-671O14.7
hsa-miR-132-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14451-14462
0.010
1
7mer
16449-16470
0.007
1
8mer+wobble
11036-11052
0.003
0
6mer
3630-3656
0.002
1
6mer
13619-13644
0.002
1
6mer
4684-4700
0.002
0
6mer
11983-12004
0.002
0
6mer
17382-17396
0.002
1
6mer
8204-8223
0.001
0
AC060834.3
hsa-miR-132-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447999
Biotype: lincRNA
Gene id: ENSG00000234710
Gene Name: AC060834.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
262-289
0.025
0
6mer
448-466
0.005
1
RP11-1018N14.5
hsa-miR-132-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588341
Biotype: lincRNA
Gene id: ENSG00000267452
Gene Name: RP11-1018N14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1077-1101
0.013
0
7mer
1879-1898
0.007
0
6mer
2715-2737
0.006
1
6mer
2435-2457
0.004
0
SRGAP2-AS1
hsa-miR-132-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450872
Biotype: antisense
Gene id: ENSG00000233501
Gene Name: SRGAP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
711-721
0.016
3
7mer
495-513
0.009
1
7mer
1013-1034
0.006
1
RP5-912I13.1
hsa-miR-132-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000569431
Biotype: sense_overlapping
Gene id: ENSG00000260426
Gene Name: RP5-912I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1735-1759
0.030
1
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