LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
CTD-2534J5.1
hsa-miR-1294
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517640
Biotype: lincRNA
Gene id: ENSG00000253783
Gene Name: CTD-2534J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-543
0.025
0
LINC00520
hsa-miR-1294
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560336
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-262
0.025
1
XLOC_009294
hsa-miR-1294
0.705
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019492
Biotype: transcript isomorph
Gene id: XLOC_009294
Gene Name: XLOC_009294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-717
0.015
1
7mer
118-136
0.006
1
6mer
1564-1589
0.004
1
XLOC_013531
hsa-miR-1294
0.704
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-563
0.013
0
6mer
5077-5102
0.007
1
6mer
620-647
0.002
1
6mer
2980-3001
0.002
1
6mer
1565-1587
0.001
Not Conserved
AC104820.2
hsa-miR-1294
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428474
Biotype: lincRNA
Gene id: ENSG00000234663
Gene Name: AC104820.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-82
0.025
1
RP11-333E1.1
hsa-miR-1294
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_034082.1
Biotype: antisense
Gene id: NR_034082.1 (gene)
Gene Name: RP11-333E1.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
294-318
0.025
1
IPO11-LRRC70
hsa-miR-1294
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_073584.1
Biotype: sense
Gene id: NR_073584.1 (gene)
Gene Name: IPO11-LRRC70
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1798-1811
0.025
6
XLOC_007514
hsa-miR-1294
0.704
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016128
Biotype: transcript isomorph
Gene id: XLOC_007514
Gene Name: XLOC_007514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-257
0.019
1
6mer
400-412
0.006
0
CTC-490G23.4
hsa-miR-1294
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000607109
Biotype: antisense
Gene id: ENSG00000272396
Gene Name: CTC-490G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-311
0.025
4
RP11-626K17.3
hsa-miR-1294
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3588-3610
0.013
1
7mer
680-697
0.007
0
7mer
3494-3514
0.002
Not Conserved
6mer
3358-3380
0.002
0
XLOC_002384
hsa-miR-1294
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-88
0.013
2
6mer
816-838
0.004
1
6mer
1395-1421
0.004
2
6mer
1096-1111
0.003
1
AC008440.5
hsa-miR-1294
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000413496
Biotype: antisense
Gene id: ENSG00000232220
Gene Name: AC008440.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-307
0.025
2
RP11-503G7.2
hsa-miR-1294
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537742
Biotype: lincRNA
Gene id: ENSG00000256875
Gene Name: RP11-503G7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-452
0.025
0
XLOC_013474
hsa-miR-1294
0.702
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028118
Biotype: transcript isomorph
Gene id: XLOC_013474
Gene Name: XLOC_013474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-169
0.025
0
XLOC_012981
hsa-miR-1294
0.702
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
186-211
0.012
1
6mer
2766-2791
0.007
0
6mer
1915-1928
0.006
1
LINC00689
hsa-miR-1294
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447563
Biotype: lincRNA
Gene id: ENSG00000231419
Gene Name: LINC00689
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3180-3194
0.011
1
7mer
3472-3492
0.007
1
7mer
770-793
0.003
0
6mer
172-194
0.003
1
RP11-211N8.2
hsa-miR-1294
0.702
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420615
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-166
0.025
0
RP11-15F12.1
hsa-miR-1294
0.701
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584252
Biotype: antisense
Gene id: ENSG00000264269
Gene Name: RP11-15F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
475-502
0.025
1
AC005042.4
hsa-miR-1294
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000342892
Biotype: antisense
Gene id: ENSG00000204380
Gene Name: AC005042.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2670-2688
0.009
2
7mer
1230-1250
0.009
1
7mer
698-720
0.005
1
7mer
1658-1680
0.002
1
RP11-119F7.5
hsa-miR-1294
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562082
Biotype: sense_overlapping
Gene id: ENSG00000260400
Gene Name: RP11-119F7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-296
0.025
1
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