LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
AC092687.4
hsa-miR-1294
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418835
Biotype: lincRNA
Gene id: ENSG00000232056
Gene Name: AC092687.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-160
0.026
0
FAM157C
hsa-miR-1294
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563357
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1014-1033
0.020
1
7mer
417-435
0.006
0
RMDN2-AS1
hsa-miR-1294
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601029
Biotype: antisense
Gene id: ENSG00000235848
Gene Name: RMDN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-495
0.022
1
6mer
407-424
0.003
1
XLOC_012759
hsa-miR-1294
0.712
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026415
Biotype: transcript isomorph
Gene id: XLOC_012759
Gene Name: XLOC_012759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.023
1
6mer
512-535
0.003
0
LINC01002
hsa-miR-1294
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622077
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-355
0.006
0
7mer
93-119
0.004
Not Conserved
7mer
44-69
0.004
Not Conserved
6mer
401-421
0.004
0
7mer
287-313
0.003
Not Conserved
7mer
238-263
0.003
Not Conserved
6mer
191-216
0.002
Not Conserved
6mer
141-166
0.001
Not Conserved
AP000997.2
hsa-miR-1294
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5229-5251
0.012
9
7mer
6177-6198
0.008
0
6mer
6558-6577
0.002
3
6mer
1337-1352
0.002
1
6mer
3912-3932
0.001
2
SORCS3-AS1
hsa-miR-1294
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449805
Biotype: antisense
Gene id: ENSG00000226387
Gene Name: SORCS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1134-1155
0.025
6
RP11-20J15.3
hsa-miR-1294
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452578
Biotype: lincRNA
Gene id: ENSG00000229116
Gene Name: RP11-20J15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
42-60
0.020
1
6mer
362-380
0.003
0
8mer+wobble
1037-1062
0.002
Not Conserved
TTN-AS1
hsa-miR-1294
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591466
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-410
0.025
9
RP11-733O18.1
hsa-miR-1294
0.710
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444185
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-526
0.017
1
6mer
142-157
0.009
1
LINC01215
hsa-miR-1294
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607746
Biotype: lincRNA
Gene id: ENSG00000271856
Gene Name: LINC01215
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2412-2434
0.012
0
7mer
908-929
0.007
1
6mer
31-55
0.006
3
FAM157B
hsa-miR-1294
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446912
Biotype: lincRNA
Gene id: ENSG00000233013
Gene Name: FAM157B
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1005-1024
0.020
1
7mer
408-426
0.005
0
XLOC_013715
hsa-miR-1294
0.708
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028361
Biotype: transcript isomorph
Gene id: XLOC_013715
Gene Name: XLOC_013715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-316
0.025
1
RP1-41C23.1
hsa-miR-1294
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578650
Biotype: lincRNA
Gene id: ENSG00000266877
Gene Name: RP1-41C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-283
0.021
2
6mer
378-396
0.004
1
AC016747.3
hsa-miR-1294
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420918
Biotype: lincRNA
Gene id: ENSG00000212978
Gene Name: AC016747.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2485-2505
0.025
1
RP11-65M17.3
hsa-miR-1294
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529827
Biotype: lincRNA
Gene id: ENSG00000254968
Gene Name: RP11-65M17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-309
0.025
2
RP11-379P15.1
hsa-miR-1294
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2632-2656
0.024
9
6mer
2406-2430
0.001
2
MORF4L2-AS1
hsa-miR-1294
0.706
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435306
Biotype: antisense
Gene id: ENSG00000231154
Gene Name: MORF4L2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1724-1747
0.020
1
6mer
682-703
0.005
1
RP11-91I20.1
hsa-miR-1294
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000373384
Biotype: lincRNA
Gene id: ENSG00000255289
Gene Name: RP11-91I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-290
0.025
1
LINC00665
hsa-miR-1294
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591372
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-805
0.021
0
6mer
2079-2099
0.004
0
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