LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-661G16.1
hsa-miR-1294
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554967
Biotype: antisense
Gene id: ENSG00000258437
Gene Name: RP11-661G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-521
0.021
2
6mer
18-36
0.005
4
LINC00836
hsa-miR-1294
0.718
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108068.1
Biotype: lincRNA
Gene id: NR_108068.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
624-650
0.013
0
6mer
11-38
0.005
2
6mer
119-135
0.005
0
6mer
372-393
0.003
1
RP11-417J1.1
hsa-miR-1294
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505784
Biotype: lincRNA
Gene id: ENSG00000249782
Gene Name: RP11-417J1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-102
0.018
1
7mer
158-178
0.008
0
RP1-29C18.10
hsa-miR-1294
0.717
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000391625
Biotype: lincRNA
Gene id: ENSG00000212939
Gene Name: RP1-29C18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3472-3497
0.009
0
7mer
398-414
0.005
Not Conserved
7mer
2851-2870
0.003
Not Conserved
7mer
3039-3065
0.002
Not Conserved
7mer
2921-2948
0.002
Not Conserved
7mer
2960-2987
0.002
Not Conserved
7mer
2882-2909
0.002
Not Conserved
7mer
2999-3026
0.001
Not Conserved
C9orf53
hsa-miR-1294
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024274.1
Biotype: sense
Gene id: NR_024274.1 (gene)
Gene Name: C9orf53
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-189
0.026
1
XLOC_000294
hsa-miR-1294
0.716
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-424
0.017
1
6mer
4197-4215
0.002
0
6mer
6276-6287
0.002
3
6mer
6808-6828
0.002
0
6mer
8034-8052
0.001
3
6mer
4865-4880
0.001
1
6mer
3605-3624
0.001
Not Conserved
RP11-280K24.4
hsa-miR-1294
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553312
Biotype: sense_overlapping
Gene id: ENSG00000258535
Gene Name: RP11-280K24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4962-4987
0.008
1
9mer
1702-1719
0.006
0
6mer
5329-5352
0.003
1
6mer
5236-5251
0.003
0
6mer
3187-3209
0.001
0
6mer
2031-2049
0.001
2
6mer
2256-2282
0.001
Not Conserved
6mer
4091-4108
0.001
Not Conserved
CTD-2162K18.3
hsa-miR-1294
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
552-576
0.026
1
LINC01153
hsa-miR-1294
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429809
Biotype: lincRNA
Gene id: ENSG00000227143
Gene Name: LINC01153
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2399-2421
0.009
0
7mer
750-770
0.008
0
7mer
2263-2288
0.005
1
7mer
2261-2279
0.004
0
XLOC_006324
hsa-miR-1294
0.715
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-314
0.026
0
LPHN3-AS1
hsa-miR-1294
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506704
Biotype: antisense
Gene id: ENSG00000248692
Gene Name: LPHN3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-412
0.021
Not Conserved
6mer
398-418
0.005
1
CTD-2384B11.2
hsa-miR-1294
0.715
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507514
Biotype: antisense
Gene id: ENSG00000225407
Gene Name: CTD-2384B11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-372
0.021
0
6mer
472-485
0.004
1
SND1-IT1
hsa-miR-1294
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000623342
Biotype: lincRNA
Gene id: ENSG00000279078
Gene Name: SND1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1965
0.016
0
7mer
428-446
0.005
1
6mer
1495-1520
0.004
6
RP11-178F10.3
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581648
Biotype: lincRNA
Gene id: ENSG00000266489
Gene Name: RP11-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-470
0.026
0
RP11-491F9.8
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569877
Biotype: lincRNA
Gene id: ENSG00000259957
Gene Name: RP11-491F9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-116
0.012
1
7mer
241-266
0.008
0
7mer
300-324
0.005
2
GCSAML-AS1
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
882-902
0.011
0
6mer
361-380
0.008
2
6mer
1606-1625
0.004
1
6mer
651-676
0.003
0
XLOC_002701
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006091
Biotype: transcript isomorph
Gene id: XLOC_002701
Gene Name: XLOC_002701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-565
0.023
5
6mer
329-355
0.002
1
XLOC_003406
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1056-1074
0.016
1
6mer
3937-3952
0.003
1
6mer
3221-3242
0.003
1
6mer
1559-1580
0.002
1
6mer
4072-4097
0.002
0
RP11-659P15.1
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526131
Biotype: lincRNA
Gene id: ENSG00000255146
Gene Name: RP11-659P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1819-1844
0.024
1
6mer
1248-1268
0.002
1
MIR663AHG
hsa-miR-1294
0.713
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432499
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-293
0.026
1
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