LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
GJA9-MYCBP
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1079-1103
0.026
8
LINC01391
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495287
Biotype: lincRNA
Gene id: ENSG00000244578
Gene Name: LINC01391
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-479
0.014
1
8mer+wobble
3253-3269
0.010
0
6mer
2832-2841
0.002
0
AC007228.11
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596587
Biotype: antisense
Gene id: ENSG00000269696
Gene Name: AC007228.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-621
0.024
1
6mer
359-370
0.003
0
LINC00635
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_015414.1
Biotype: lincRNA
Gene id: NR_015414.1 (gene)
Gene Name: LINC00635
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
971-997
0.026
1
LINC00635
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464359
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1330-1356
0.026
1
XLOC_007690
hsa-miR-1294
0.723
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1634-1657
0.010
0
7mer
225-243
0.008
Not Conserved
6mer
552-567
0.007
1
7mer
2362-2381
0.001
Not Conserved
RP11-231E4.3
hsa-miR-1294
0.722
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583702
Biotype: antisense
Gene id: ENSG00000264340
Gene Name: RP11-231E4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-184
0.026
2
RP11-79E3.3
hsa-miR-1294
0.722
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505018
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2063-2074
0.015
1
7mer
1854-1873
0.011
0
ESRG
hsa-miR-1294
0.721
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027122.1
Biotype: antisense
Gene id: NR_027122.1 (gene)
Gene Name: ESRG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1375-1397
0.015
Not Conserved
6mer
2846-2860
0.004
Not Conserved
6mer
3075-3092
0.004
0
6mer
931-947
0.002
0
7mer
1728-1737
0.002
Not Conserved
ESRG
hsa-miR-1294
0.721
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000583516
Biotype: sense_intronic
Gene id: ENSG00000265992
Gene Name: ESRG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1377-1399
0.015
Not Conserved
6mer
2848-2862
0.004
Not Conserved
6mer
3077-3094
0.004
0
6mer
933-949
0.002
0
7mer
1730-1739
0.002
Not Conserved
XLOC_004641
hsa-miR-1294
0.721
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010179
Biotype: transcript isomorph
Gene id: XLOC_004641
Gene Name: XLOC_004641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-280
0.023
1
7mer
736-758
0.003
2
AC079612.2
hsa-miR-1294
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446029
Biotype: lincRNA
Gene id: ENSG00000227459
Gene Name: AC079612.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-280
0.026
1
RP11-316M21.6
hsa-miR-1294
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444359
Biotype: antisense
Gene id: ENSG00000227492
Gene Name: RP11-316M21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-527
0.026
1
XLOC_009682
hsa-miR-1294
0.720
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020351
Biotype: transcript isomorph
Gene id: XLOC_009682
Gene Name: XLOC_009682
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-230
0.026
1
OTUD6B-AS1
hsa-miR-1294
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522817
Biotype: antisense
Gene id: ENSG00000253738
Gene Name: OTUD6B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-802
0.026
1
LINC00951
hsa-miR-1294
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038887.1
Biotype: lincRNA
Gene id: NR_038887.1 (gene)
Gene Name: LINC00951
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2865-2887
0.013
1
7mer
2421-2448
0.005
Not Conserved
6mer
2903-2920
0.004
3
6mer
873-898
0.002
1
6mer
674-699
0.002
2
RP11-217E22.5
hsa-miR-1294
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463297
Biotype: lincRNA
Gene id: ENSG00000243486
Gene Name: RP11-217E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-161
0.019
1
6mer
86-107
0.004
1
6mer
194-211
0.003
0
LINC00998
hsa-miR-1294
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000397764
Biotype: lincRNA
Gene id: ENSG00000214194
Gene Name: LINC00998
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-674
0.026
2
LINC00112
hsa-miR-1294
0.719
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432830
Biotype: antisense
Gene id: ENSG00000232401
Gene Name: LINC00112
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-56
0.018
1
6mer
358-381
0.004
0
6mer
148-174
0.004
0
XLOC_004500
hsa-miR-1294
0.718
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010053
Biotype: transcript isomorph
Gene id: XLOC_004500
Gene Name: XLOC_004500
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
290-306
0.026
Not Conserved
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