LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_009249
hsa-miR-1294
0.733
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019972
Biotype: transcript isomorph
Gene id: XLOC_009249
Gene Name: XLOC_009249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
944-963
0.027
0
RP11-505E24.3
hsa-miR-1294
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558979
Biotype: antisense
Gene id: ENSG00000259376
Gene Name: RP11-505E24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-94
0.027
1
RP11-873E20.1
hsa-miR-1294
0.733
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590983
Biotype: lincRNA
Gene id: ENSG00000267397
Gene Name: RP11-873E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1121-1145
0.023
1
6mer
679-696
0.004
1
LINC00052
hsa-miR-1294
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026869.1
Biotype: lincRNA
Gene id: NR_026869.1 (gene)
Gene Name: LINC00052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-529
0.020
0
6mer
1501-1524
0.004
2
6mer
414-428
0.002
0
XLOC_000839
hsa-miR-1294
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001498
Biotype: transcript isomorph
Gene id: XLOC_000839
Gene Name: XLOC_000839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-74
0.027
0
LINC00094
hsa-miR-1294
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599836
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
888-907
0.027
0
DCTN1-AS1
hsa-miR-1294
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426715
Biotype: antisense
Gene id: ENSG00000237737
Gene Name: DCTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-602
0.017
1
8mer+mismatch
186-206
0.008
3
6mer
302-324
0.002
1
XLOC_009414
hsa-miR-1294
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019614
Biotype: transcript isomorph
Gene id: XLOC_009414
Gene Name: XLOC_009414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-135
0.025
4
6mer
935-951
0.002
2
XLOC_003665
hsa-miR-1294
0.731
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008209
Biotype: transcript isomorph
Gene id: XLOC_003665
Gene Name: XLOC_003665
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-613
0.022
1
6mer
101-107
0.005
1
AP001055.6
hsa-miR-1294
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000424921
Biotype: lincRNA
Gene id: ENSG00000225331
Gene Name: AP001055.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-134
0.025
1
6mer
215-234
0.002
Not Conserved
CTC-340A15.2
hsa-miR-1294
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000486913
Biotype: antisense
Gene id: ENSG00000241956
Gene Name: CTC-340A15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1230
0.024
0
6mer
827-852
0.003
1
RP1-309I22.2
hsa-miR-1294
0.731
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9816-9842
0.005
2
8mer
20917-20944
0.004
2
7mer
22673-22695
0.004
6
7mer
23042-23050
0.003
2
6mer
618-640
0.002
2
6mer
24111-24136
0.002
3
6mer
1366-1390
0.001
1
6mer
27060-27075
0.001
1
6mer
3884-3908
0.001
Not Conserved
6mer
3231-3252
0.001
1
6mer
24873-24890
0.001
1
6mer
18251-18272
0.001
1
6mer
3255-3277
0.000
2
NPHP3-ACAD11
hsa-miR-1294
0.731
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-281
0.017
1
7mer
6634-6660
0.007
2
6mer
2004-2019
0.002
1
6mer
1098-1116
0.002
3
RP11-320N21.1
hsa-miR-1294
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501164
Biotype: antisense
Gene id: ENSG00000245080
Gene Name: RP11-320N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-192
0.021
2
6mer
2534-2548
0.004
0
6mer
987-1003
0.002
0
RP4-671O14.7
hsa-miR-1294
0.730
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3688-3712
0.010
0
8mer
11259-11279
0.007
0
6mer
17650-17663
0.001
1
6mer
12144-12165
0.001
1
6mer
9083-9107
0.001
0
6mer
11781-11804
0.001
0
6mer
10442-10467
0.001
1
6mer
9484-9505
0.001
0
6mer
10359-10377
0.001
1
6mer
12080-12096
0.001
1
6mer
13257-13273
0.001
Not Conserved
6mer
14747-14769
0.001
0
6mer
17024-17047
0.001
0
6mer
3664-3689
0.001
1
XLOC_004879
hsa-miR-1294
0.730
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010376
Biotype: transcript isomorph
Gene id: XLOC_004879
Gene Name: XLOC_004879
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
530-554
0.013
1
6mer
3249-3270
0.004
0
6mer
217-237
0.004
1
6mer
3216-3242
0.003
0
6mer
423-441
0.002
0
RP11-106M7.1
hsa-miR-1294
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436932
Biotype: lincRNA
Gene id: ENSG00000228484
Gene Name: RP11-106M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-145
0.020
0
6mer
1655-1677
0.003
1
6mer
1381-1397
0.002
1
6mer
1253-1269
0.002
0
RP11-674N23.4
hsa-miR-1294
0.728
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609424
Biotype: sense_intronic
Gene id: ENSG00000272788
Gene Name: RP11-674N23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-31
0.027
1
XLOC_000206
hsa-miR-1294
0.728
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000205
Biotype: transcript isomorph
Gene id: XLOC_000206
Gene Name: XLOC_000206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1503-1521
0.027
0
RP11-805J14.5
hsa-miR-1294
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526174
Biotype: antisense
Gene id: ENSG00000254721
Gene Name: RP11-805J14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-777
0.014
0
7mer
801-826
0.012
Not Conserved
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