LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
LOC90246
hsa-miR-1294
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026954.1
Biotype: lincRNA
Gene id: NR_026954.1 (gene)
Gene Name: LOC90246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1474-1499
0.010
0
8mer
2091-2114
0.008
0
6mer
873-891
0.005
1
6mer
1794-1812
0.003
0
6mer
2084-2102
0.001
0
RP11-440I14.2
hsa-miR-1294
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515178
Biotype: lincRNA
Gene id: ENSG00000250596
Gene Name: RP11-440I14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2036-2060
0.016
0
6mer
541-561
0.004
3
6mer
788-804
0.003
1
6mer
587-606
0.002
1
6mer
1653-1669
0.002
1
RP11-463O9.9
hsa-miR-1294
0.738
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602739
Biotype: lincRNA
Gene id: ENSG00000270020
Gene Name: RP11-463O9.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-438
0.016
2
7mer
2652-2676
0.006
1
6mer
183-206
0.003
0
6mer
3003-3030
0.002
Not Conserved
LINC00942
hsa-miR-1294
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515614
Biotype: lincRNA
Gene id: ENSG00000249628
Gene Name: LINC00942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-511
0.016
5
6mer
274-297
0.004
3
7mer
1134-1150
0.003
0
6mer
1930-1956
0.003
0
6mer
150-176
0.002
1
LINC00284
hsa-miR-1294
0.738
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617476
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-30
0.025
1
6mer
500-522
0.003
0
RP11-617F23.1
hsa-miR-1294
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620791
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
77-98
0.018
2
7mer
282-288
0.009
3
LINC00284
hsa-miR-1294
0.737
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000592085
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-32
0.024
1
6mer
574-596
0.003
0
BLACAT1
hsa-miR-1294
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103783.1
Biotype: sense
Gene id: NR_103783.1 (gene)
Gene Name: BLACAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2038-2064
0.025
4
6mer
548-572
0.002
0
PRICKLE2-AS1
hsa-miR-1294
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-236
0.014
0
7mer
736-752
0.010
5
6mer
1494-1518
0.002
7
6mer
2965-2982
0.001
4
6mer
1576-1595
0.001
3
RP11-115H13.1
hsa-miR-1294
0.736
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1600-1615
0.018
0
6mer
1566-1581
0.008
1
6mer
917-937
0.002
0
RP11-299J3.8
hsa-miR-1294
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-928
0.027
10
ENOX1-AS1
hsa-miR-1294
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1472-1480
0.020
3
6mer
2692-2719
0.003
3
6mer
1152-1167
0.003
4
7mer
2478-2500
0.001
1
6mer
2401-2416
0.001
0
LINC00284
hsa-miR-1294
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616953
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-32
0.024
1
6mer
633-655
0.003
0
XLOC_006459
hsa-miR-1294
0.735
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
268-291
0.012
1
6mer
22-43
0.008
0
6mer
1474-1498
0.004
0
6mer
724-748
0.003
0
RP11-403I13.8
hsa-miR-1294
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621033
Biotype: retained_intron
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2410-2436
0.009
Not Conserved
7mer
51-72
0.008
1
7mer
1342-1367
0.005
Not Conserved
8mer
2549-2574
0.003
Not Conserved
MORC2-AS1
hsa-miR-1294
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000432624
Biotype: antisense
Gene id: ENSG00000235989
Gene Name: MORC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1602-1620
0.024
3
6mer
958-978
0.004
5
XLOC_002245
hsa-miR-1294
0.734
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004366
Biotype: transcript isomorph
Gene id: XLOC_002245
Gene Name: XLOC_002245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-279
0.016
3
6mer
199-219
0.008
3
7mer
838-857
0.004
0
MLIP-AS1
hsa-miR-1294
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587216
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
423-437
0.011
0
7mer
559-576
0.009
1
7mer
510-528
0.007
1
PXN-AS1
hsa-miR-1294
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535200
Biotype: antisense
Gene id: ENSG00000255857
Gene Name: PXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-554
0.024
7
6mer
1124-1148
0.003
1
PART1
hsa-miR-1294
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4467-4483
0.005
0
7mer
2784-2796
0.005
1
6mer
240-266
0.004
3
7mer
1903-1920
0.004
0
6mer
270-295
0.004
0
6mer
3816-3838
0.002
2
6mer
911-933
0.002
4
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