LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_000649
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001361
Biotype: transcript isomorph
Gene id: XLOC_000649
Gene Name: XLOC_000649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-279
0.023
1
6mer
800-819
0.005
0
RP5-1063M23.1
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505276
Biotype: lincRNA
Gene id: ENSG00000250770
Gene Name: RP5-1063M23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
777-799
0.014
1
7mer
1800-1817
0.007
1
6mer
1511-1533
0.003
1
6mer
221-245
0.003
1
6mer
1483-1503
0.001
1
LINC01002
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000618952
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-277
0.008
0
7mer
63-88
0.004
Not Conserved
7mer
15-41
0.004
Not Conserved
6mer
323-343
0.004
0
7mer
112-138
0.003
Not Conserved
7mer
209-235
0.003
Not Conserved
6mer
161-185
0.002
Not Conserved
SNHG18
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508179
Biotype: lincRNA
Gene id: ENSG00000250786
Gene Name: SNHG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1060-1081
0.016
1
7mer
1176-1195
0.006
1
8mer
1253-1275
0.006
1
LL22NC03-27C5.1
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624219
Biotype: lincRNA
Gene id: ENSG00000278890
Gene Name: LL22NC03-27C5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-549
0.014
0
8mer
579-599
0.011
1
6mer
882-906
0.001
Not Conserved
6mer
4253-4272
0.001
1
6mer
4099-4119
0.001
0
RP11-138I1.2
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580996
Biotype: antisense
Gene id: ENSG00000264739
Gene Name: RP11-138I1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1965-1985
0.014
3
7mer
556-582
0.007
1
6mer
469-487
0.004
3
6mer
263-278
0.003
1
XXbac-BPGBPG55C20.2
hsa-miR-1294
0.743
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4567-4585
0.017
0
6mer
5119-5143
0.005
0
7mer
3753-3760
0.003
Not Conserved
7mer
3718-3743
0.002
0
RP11-344E13.3
hsa-miR-1294
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-210
0.028
0
RP11-363J20.1
hsa-miR-1294
0.742
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557409
Biotype: lincRNA
Gene id: ENSG00000258957
Gene Name: RP11-363J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-125
0.025
0
6mer
486-503
0.003
1
RP11-122A21.2
hsa-miR-1294
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504175
Biotype: antisense
Gene id: ENSG00000250267
Gene Name: RP11-122A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1069-1088
0.028
0
RP11-613D13.8
hsa-miR-1294
0.741
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501541
Biotype: lincRNA
Gene id: ENSG00000244953
Gene Name: RP11-613D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-59
0.016
4
7mer
1452-1469
0.008
1
6mer
1935-1961
0.004
1
RP11-2A4.4
hsa-miR-1294
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1769-1790
0.025
1
6mer
4385-4406
0.003
1
GPR1-AS
hsa-miR-1294
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623040
Biotype: antisense
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-682
0.028
1
RP11-429B14.3
hsa-miR-1294
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560477
Biotype: antisense
Gene id: ENSG00000259615
Gene Name: RP11-429B14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
379-402
0.024
0
6mer
428-455
0.004
0
FAM157A
hsa-miR-1294
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-386
0.028
0
XLOC_006800
hsa-miR-1294
0.740
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014702
Biotype: transcript isomorph
Gene id: XLOC_006800
Gene Name: XLOC_006800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-354
0.028
2
MIR4435-1HG
hsa-miR-1294
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439494
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-88
0.023
1
6mer
50-64
0.005
1
RP11-946L20.2
hsa-miR-1294
0.740
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524283
Biotype: lincRNA
Gene id: ENSG00000253877
Gene Name: RP11-946L20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-227
0.015
0
7mer
378-395
0.012
0
AL133493.2
hsa-miR-1294
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4483-4510
0.018
1
7mer
2507-2522
0.003
1
6mer
656-682
0.002
0
6mer
2773-2796
0.001
1
6mer
3949-3973
0.001
0
6mer
828-848
0.001
0
6mer
4080-4102
0.001
1
XLOC_010305
hsa-miR-1294
0.740
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021721
Biotype: transcript isomorph
Gene id: XLOC_010305
Gene Name: XLOC_010305
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1459-1481
0.028
1
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