LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
CADM3-AS1
hsa-miR-1294
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-467
0.014
8
6mer
3-25
0.006
3
6mer
320-340
0.005
1
6mer
2804-2828
0.002
1
6mer
422-442
0.002
1
STEAP3-AS1
hsa-miR-1294
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454260
Biotype: antisense
Gene id: ENSG00000229867
Gene Name: STEAP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-688
0.016
1
7mer
515-528
0.004
Not Conserved
6mer
2724-2737
0.003
2
6mer
98-117
0.003
1
6mer
2181-2204
0.002
2
6mer
1415-1433
0.002
2
RP11-760H22.2
hsa-miR-1294
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000574086
Biotype: lincRNA
Gene id: ENSG00000254343
Gene Name: RP11-760H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
115-137
0.029
0
SEPT7-AS1
hsa-miR-1294
0.751
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412856
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-97
0.029
4
RP11-963H4.3
hsa-miR-1294
0.750
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585243
Biotype: lincRNA
Gene id: ENSG00000263508
Gene Name: RP11-963H4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-170
0.025
1
6mer
374-395
0.004
0
LOC100190986
hsa-miR-1294
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2338-2362
0.015
0
6mer
1905-1923
0.007
0
6mer
1047-1067
0.007
0
RP5-1042K10.13
hsa-miR-1294
0.750
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609279
Biotype: antisense
Gene id: ENSG00000272834
Gene Name: RP5-1042K10.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-386
0.026
1
7mer
260-277
0.003
0
RP11-449D8.1
hsa-miR-1294
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-723
0.029
4
CTA-243E7.1
hsa-miR-1294
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3149-3166
0.005
1
7mer
12811-12830
0.005
0
7mer
9463-9480
0.004
3
6mer
12660-12678
0.003
0
7mer
9568-9587
0.003
Not Conserved
7mer
2442-2451
0.002
0
6mer
875-900
0.001
0
6mer
6771-6795
0.001
1
6mer
11642-11663
0.001
0
6mer
7059-7080
0.001
0
6mer
8341-8356
0.001
1
PXN-AS1
hsa-miR-1294
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038924.1
Biotype: antisense
Gene id: NR_038924.1 (gene)
Gene Name: PXN-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-457
0.029
7
RP1-74M1.3
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610135
Biotype: lincRNA
Gene id: ENSG00000272796
Gene Name: RP1-74M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
522-542
0.009
1
7mer
4169-4191
0.007
1
6mer
4016-4040
0.004
3
6mer
858-872
0.004
4
6mer
2462-2478
0.002
2
6mer
598-616
0.002
0
6mer
1531-1549
0.001
2
CTA-481E9.4
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569048
Biotype: lincRNA
Gene id: ENSG00000259929
Gene Name: CTA-481E9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.024
0
6mer
371-388
0.004
0
XLOC_008488
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018207
Biotype: transcript isomorph
Gene id: XLOC_008488
Gene Name: XLOC_008488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-175
0.029
4
XLOC_009788
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
909-933
0.013
1
6mer
153-168
0.006
3
6mer
4411-4431
0.005
3
7mer
3905-3927
0.003
0
6mer
2412-2439
0.002
Not Conserved
RP11-231E6.1
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1419-1444
0.016
1
7mer
1016-1037
0.009
0
6mer
1316-1341
0.004
0
XLOC_000462
hsa-miR-1294
0.748
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001200
Biotype: transcript isomorph
Gene id: XLOC_000462
Gene Name: XLOC_000462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-582
0.025
1
7mer
547-568
0.004
0
PRKCQ-AS1
hsa-miR-1294
0.747
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609346
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-568
0.028
1
LINC00284
hsa-miR-1294
0.747
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613822
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-40
0.025
1
6mer
659-681
0.003
0
MORC2-AS1
hsa-miR-1294
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000422995
Biotype: antisense
Gene id: ENSG00000235989
Gene Name: MORC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1742-1760
0.018
3
6mer
2205-2218
0.007
6
6mer
1098-1118
0.003
5
DDR1-AS1
hsa-miR-1294
0.747
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458361
Biotype: antisense
Gene id: ENSG00000237775
Gene Name: DDR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3341-3358
0.013
0
7mer
1561-1582
0.007
1
6mer
3631-3658
0.004
1
6mer
418-440
0.002
0
6mer
1659-1675
0.002
1
6mer
3137-3161
0.001
0
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