LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-123M6.2
hsa-miR-1294
0.775
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554041
Biotype: antisense
Gene id: ENSG00000258663
Gene Name: RP11-123M6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-219
0.031
5
LINC00654
hsa-miR-1294
0.775
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-306
0.023
1
7mer
2590-2615
0.004
1
6mer
349-368
0.003
0
6mer
1048-1070
0.002
1
XLOC_007725
hsa-miR-1294
0.774
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016344
Biotype: transcript isomorph
Gene id: XLOC_007725
Gene Name: XLOC_007725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-601
0.031
3
AC022007.5
hsa-miR-1294
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437616
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
400-422
0.018
0
6mer
143-164
0.013
0
RPARP-AS1
hsa-miR-1294
0.774
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000494270
Biotype: lincRNA
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-647
0.031
1
AC079586.1
hsa-miR-1294
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1840-1860
0.017
0
6mer
2105-2125
0.010
5
6mer
1135-1155
0.002
1
6mer
599-623
0.002
1
LOC100131825
hsa-miR-1294
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037870.1
Biotype: antisense
Gene id: NR_037870.1 (gene)
Gene Name: LOC100131825
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-467
0.015
8
6mer
3-25
0.007
3
6mer
320-340
0.004
1
6mer
2804-2828
0.003
1
6mer
422-442
0.002
1
RP11-542F9.1
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449928
Biotype: lincRNA
Gene id: ENSG00000223504
Gene Name: RP11-542F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
269-288
0.031
1
RP11-467H10.2
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000459742
Biotype: processed_transcript
Gene id: ENSG00000259628
Gene Name: RP11-467H10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-301
0.031
0
CTD-2184D3.6
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559825
Biotype: lincRNA
Gene id: ENSG00000259327
Gene Name: CTD-2184D3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-190
0.031
1
CITF22-92A6.1
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608290
Biotype: lincRNA
Gene id: ENSG00000273145
Gene Name: CITF22-92A6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1009-1025
0.031
2
XLOC_006242
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-692
0.025
1
6mer
2040-2050
0.005
0
XLOC_008843
hsa-miR-1294
0.773
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018944
Biotype: transcript isomorph
Gene id: XLOC_008843
Gene Name: XLOC_008843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-601
0.031
1
XLOC_010743
hsa-miR-1294
0.772
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022133
Biotype: transcript isomorph
Gene id: XLOC_010743
Gene Name: XLOC_010743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6480-6505
0.011
0
8mer
7337-7359
0.005
Not Conserved
7mer
549-574
0.005
0
7mer
809-833
0.003
0
6mer
3404-3421
0.002
1
7mer
1723-1750
0.001
0
6mer
3599-3623
0.001
Not Conserved
6mer
1392-1411
0.001
0
6mer
2936-2955
0.001
0
6mer
6437-6457
0.001
0
LOC284578
hsa-miR-1294
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027086.1
Biotype: lincRNA
Gene id: NR_027086.1 (gene)
Gene Name: LOC284578
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2141-2159
0.026
1
6mer
1946-1960
0.005
2
RP4-798P15.3
hsa-miR-1294
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000354921
Biotype: processed_transcript
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-132
0.026
6
6mer
4144-4166
0.003
5
6mer
2671-2692
0.002
6
RP11-94H6.1
hsa-miR-1294
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508374
Biotype: lincRNA
Gene id: ENSG00000249441
Gene Name: RP11-94H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-168
0.031
1
RP11-166N6.2
hsa-miR-1294
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469268
Biotype: antisense
Gene id: ENSG00000243273
Gene Name: RP11-166N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
516-530
0.031
2
RP11-715J22.4
hsa-miR-1294
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566085
Biotype: lincRNA
Gene id: ENSG00000260874
Gene Name: RP11-715J22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-519
0.015
1
7mer
482-496
0.012
2
6mer
18-43
0.004
0
RP11-99A1.2
hsa-miR-1294
0.770
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590604
Biotype: lincRNA
Gene id: ENSG00000267311
Gene Name: RP11-99A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
915-926
0.030
6
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