LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
AP000857.3
hsa-miR-1294
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532123
Biotype: antisense
Gene id: ENSG00000255555
Gene Name: AP000857.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-181
0.032
0
LINC00094
hsa-miR-1294
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3252-3271
0.016
0
6mer
143-165
0.004
1
6mer
477-504
0.004
7
7mer
1692-1709
0.004
0
7mer
4867-4891
0.002
1
6mer
4849-4876
0.002
1
LINC00664
hsa-miR-1294
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-516
0.032
1
LINC00052
hsa-miR-1294
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560153
Biotype: lincRNA
Gene id: ENSG00000259527
Gene Name: LINC00052
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-529
0.020
0
6mer
1900-1921
0.005
0
6mer
1501-1524
0.004
2
6mer
414-428
0.002
0
RP11-513G11.2
hsa-miR-1294
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440556
Biotype: lincRNA
Gene id: ENSG00000228271
Gene Name: RP11-513G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
926-935
0.017
4
7mer
1142-1166
0.015
4
AC009480.3
hsa-miR-1294
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000402410
Biotype: antisense
Gene id: ENSG00000223911
Gene Name: AC009480.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-124
0.031
10
AC084219.4
hsa-miR-1294
0.781
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592946
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2659-2680
0.012
4
7mer
1483-1503
0.008
2
7mer
1735-1760
0.007
2
6mer
2239-2260
0.002
2
6mer
2575-2599
0.002
1
RP11-148L24.1
hsa-miR-1294
0.780
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515444
Biotype: lincRNA
Gene id: ENSG00000248174
Gene Name: RP11-148L24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1105-1127
0.031
0
RP11-495P10.1
hsa-miR-1294
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426101
Biotype: lincRNA
Gene id: ENSG00000231551
Gene Name: RP11-495P10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-149
0.031
2
RP11-467L13.7
hsa-miR-1294
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619086
Biotype: antisense
Gene id: ENSG00000276900
Gene Name: RP11-467L13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-565
0.030
0
6mer
1206-1221
0.002
1
AC007879.6
hsa-miR-1294
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438824
Biotype: lincRNA
Gene id: ENSG00000225064
Gene Name: AC007879.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-261
0.031
4
AC004538.3
hsa-miR-1294
0.779
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000599875
Biotype: antisense
Gene id: ENSG00000230333
Gene Name: AC004538.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-249
0.031
0
CTD-2282P23.2
hsa-miR-1294
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000618632
Biotype: antisense
Gene id: ENSG00000274441
Gene Name: CTD-2282P23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-97
0.031
1
RP11-1275H24.3
hsa-miR-1294
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608012
Biotype: lincRNA
Gene id: ENSG00000273084
Gene Name: RP11-1275H24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-471
0.031
1
ADAMTSL4-AS1
hsa-miR-1294
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617352
Biotype: antisense
Gene id: ENSG00000203804
Gene Name: ADAMTSL4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
920-944
0.031
1
XLOC_011726
hsa-miR-1294
0.778
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024417
Biotype: transcript isomorph
Gene id: XLOC_011726
Gene Name: XLOC_011726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-55
0.025
2
6mer
829-853
0.004
3
6mer
213-238
0.003
0
RP11-57H14.4
hsa-miR-1294
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4017-4039
0.028
2
6mer
809-824
0.002
1
6mer
3038-3055
0.001
Not Conserved
6mer
2095-2122
0.001
1
STX16-NPEPL1
hsa-miR-1294
0.777
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3549-3572
0.024
9
7mer
3288-3309
0.007
3
PXN-AS1
hsa-miR-1294
0.776
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620336
Biotype: antisense
Gene id: ENSG00000255857
Gene Name: PXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-196
0.031
7
XLOC_008379
hsa-miR-1294
0.775
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018118
Biotype: transcript isomorph
Gene id: XLOC_008379
Gene Name: XLOC_008379
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-484
0.031
1
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