LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
MYT1L-AS1
hsa-miR-1294
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448106
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1264-1282
0.017
2
8mer
1423-1444
0.012
0
6mer
2629-2646
0.004
3
RP11-480D4.6
hsa-miR-1294
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607691
Biotype: lincRNA
Gene id: ENSG00000272049
Gene Name: RP11-480D4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-512
0.032
0
RP11-1057B8.2
hsa-miR-1294
0.788
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505083
Biotype: lincRNA
Gene id: ENSG00000251218
Gene Name: RP11-1057B8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-460
0.023
2
6mer
43-65
0.005
2
6mer
1713-1732
0.004
1
RP11-344E13.3
hsa-miR-1294
0.788
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433763
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-633
0.032
0
XLOC_005361
hsa-miR-1294
0.788
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012534
Biotype: transcript isomorph
Gene id: XLOC_005361
Gene Name: XLOC_005361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-490
0.032
0
RP11-91K9.1
hsa-miR-1294
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2625-2647
0.026
1
7mer
523-546
0.004
1
6mer
743-769
0.002
1
AC079807.4
hsa-miR-1294
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587616
Biotype: lincRNA
Gene id: ENSG00000230773
Gene Name: AC079807.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
909-922
0.013
1
8mer
855-869
0.013
0
6mer
1263-1287
0.004
2
6mer
1146-1166
0.003
0
XLOC_012041
hsa-miR-1294
0.787
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024306
Biotype: transcript isomorph
Gene id: XLOC_012041
Gene Name: XLOC_012041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6569-6585
0.012
1
6mer
332-346
0.004
1
6mer
801-816
0.004
3
6mer
6478-6493
0.003
0
6mer
659-680
0.003
1
8mer
1555-1577
0.002
0
6mer
1313-1327
0.002
0
6mer
2449-2466
0.001
1
6mer
938-957
0.001
0
RP5-893G23.1
hsa-miR-1294
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441046
Biotype: lincRNA
Gene id: ENSG00000233372
Gene Name: RP5-893G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-111
0.027
1
6mer
488-511
0.005
1
MYT1L-AS1
hsa-miR-1294
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422175
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1198-1216
0.018
2
8mer
1357-1378
0.011
0
6mer
2563-2580
0.003
3
XLOC_002085
hsa-miR-1294
0.786
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004244
Biotype: transcript isomorph
Gene id: XLOC_002085
Gene Name: XLOC_002085
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
860-876
0.032
1
RP11-156L14.1
hsa-miR-1294
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577270
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2853-2876
0.027
0
6mer
1140-1159
0.005
6
LOC440910
hsa-miR-1294
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_030728.1
Biotype: sense
Gene id: NR_030728.1 (gene)
Gene Name: LOC440910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
205-223
0.032
Not Conserved
CTB-131B5.5
hsa-miR-1294
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-116
0.015
1
7mer
4576-4599
0.010
1
6mer
5895-5911
0.003
1
6mer
391-414
0.003
1
6mer
2697-2711
0.002
0
PRKCQ-AS1
hsa-miR-1294
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608453
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-272
0.032
1
CTB-89H12.4
hsa-miR-1294
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-228
0.026
8
6mer
7897-7919
0.003
3
6mer
2110-2131
0.002
7
RP11-63A11.1
hsa-miR-1294
0.784
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503321
Biotype: antisense
Gene id: ENSG00000250781
Gene Name: RP11-63A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-61
0.032
0
CTC-499B15.7
hsa-miR-1294
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
911-927
0.014
0
7mer
2042-2060
0.011
0
6mer
132-159
0.006
0
KB-1183D5.13
hsa-miR-1294
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000431488
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.032
0
ABHD14A-ACY1
hsa-miR-1294
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1517-1534
0.027
6
6mer
411-434
0.002
1
6mer
1132-1150
0.002
1
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