LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
AC138035.2
hsa-miR-1294
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
970-989
0.017
1
6mer
384-405
0.011
1
6mer
267-282
0.005
0
RP11-405K6.1
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533049
Biotype: lincRNA
Gene id: ENSG00000254456
Gene Name: RP11-405K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-283
0.027
1
6mer
451-475
0.006
1
MIR4697HG
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4000-4018
0.031
7
6mer
890-909
0.002
1
FLJ30403
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_034159.1
Biotype: antisense
Gene id: NR_034159.1 (gene)
Gene Name: FLJ30403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1150-1176
0.033
4
XLOC_013047
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026830
Biotype: transcript isomorph
Gene id: XLOC_013047
Gene Name: XLOC_013047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-315
0.024
1
6mer
2792-2814
0.006
1
6mer
1207-1213
0.003
1
CTD-3138B18.5
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597230
Biotype: antisense
Gene id: ENSG00000268516
Gene Name: CTD-3138B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1761-1776
0.006
1
7mer
1367-1387
0.003
1
7mer
844-863
0.003
0
6mer
1521-1541
0.002
0
7mer
1202-1218
0.002
0
7mer
1172-1188
0.002
0
7mer
1262-1278
0.001
0
6mer
2642-2659
0.001
Not Conserved
7mer
1142-1158
0.001
0
7mer
1352-1368
0.001
1
7mer
1322-1348
0.001
1
7mer
1232-1248
0.001
Not Conserved
7mer
1247-1263
0.001
0
7mer
1292-1318
0.001
Not Conserved
7mer
1112-1128
0.001
0
7mer
1307-1323
0.001
Not Conserved
7mer
1127-1143
0.001
0
7mer
1277-1293
0.001
Not Conserved
6mer
1097-1123
0.001
0
6mer
1337-1353
0.000
Not Conserved
LINC01001
hsa-miR-1294
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527683
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-281
0.028
1
6mer
324-343
0.005
0
LINC00998
hsa-miR-1294
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413744
Biotype: lincRNA
Gene id: ENSG00000214194
Gene Name: LINC00998
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-135
0.033
2
RP11-776A13.3
hsa-miR-1294
0.794
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551287
Biotype: lincRNA
Gene id: ENSG00000257756
Gene Name: RP11-776A13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-523
0.023
1
6mer
263-285
0.010
1
CTA-481E9.4
hsa-miR-1294
0.794
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567304
Biotype: lincRNA
Gene id: ENSG00000259929
Gene Name: CTA-481E9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-188
0.024
0
6mer
49-72
0.005
1
6mer
111-134
0.004
1
XLOC_008538
hsa-miR-1294
0.793
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1410-1428
0.027
0
6mer
453-474
0.005
1
RP11-394I13.3
hsa-miR-1294
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609273
Biotype: lincRNA
Gene id: ENSG00000273258
Gene Name: RP11-394I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-62
0.030
2
6mer
264-280
0.003
1
RP11-429E11.3
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000317652
Biotype: antisense
Gene id: ENSG00000179253
Gene Name: RP11-429E11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1836-1859
0.028
1
7mer
420-440
0.004
0
RP11-438F14.3
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436515
Biotype: antisense
Gene id: ENSG00000224521
Gene Name: RP11-438F14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-150
0.032
0
RP11-715J22.4
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565827
Biotype: lincRNA
Gene id: ENSG00000260874
Gene Name: RP11-715J22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-161
0.016
2
7mer
160-184
0.016
1
AC022007.5
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454232
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
364-383
0.019
0
6mer
107-128
0.013
0
LA16c-358B7.4
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000339021
Biotype: antisense
Gene id: ENSG00000274751
Gene Name: LA16c-358B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3150-3176
0.003
Not Conserved
6mer
3002-3018
0.002
Not Conserved
6mer
3082-3090
0.002
Not Conserved
6mer
2958-2974
0.002
Not Conserved
6mer
3106-3126
0.002
Not Conserved
6mer
2732-2740
0.001
Not Conserved
6mer
2920-2936
0.001
Not Conserved
6mer
2349-2366
0.001
0
6mer
2900-2916
0.001
Not Conserved
6mer
2848-2864
0.001
Not Conserved
6mer
2884-2900
0.001
Not Conserved
6mer
2864-2880
0.001
Not Conserved
6mer
2828-2845
0.001
Not Conserved
6mer
2616-2625
0.001
Not Conserved
6mer
2081-2098
0.001
1
6mer
2241-2249
0.001
1
6mer
2696-2704
0.001
Not Conserved
6mer
2524-2544
0.001
Not Conserved
6mer
1937-1945
0.001
1
6mer
2277-2286
0.001
0
6mer
2045-2062
0.001
1
6mer
2600-2616
0.001
Not Conserved
6mer
2065-2081
0.001
1
6mer
2543-2560
0.001
Not Conserved
6mer
2560-2568
0.001
Not Conserved
6mer
1981-1999
0.001
1
6mer
2005-2022
0.001
0
6mer
2660-2668
0.001
Not Conserved
6mer
2157-2174
0.001
Not Conserved
6mer
2676-2692
0.001
Not Conserved
6mer
2193-2201
0.001
Not Conserved
6mer
2309-2317
0.001
0
6mer
2333-2349
0.001
Not Conserved
XLOC_003440
hsa-miR-1294
0.791
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2609-2634
0.010
1
8mer
752-776
0.007
0
7mer
1746-1766
0.005
1
6mer
2104-2123
0.004
1
6mer
2128-2146
0.002
1
6mer
2114-2138
0.002
1
6mer
1807-1823
0.001
0
6mer
2146-2167
0.001
0
RP11-332H14.2
hsa-miR-1294
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610036
Biotype: lincRNA
Gene id: ENSG00000272994
Gene Name: RP11-332H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-186
0.015
3
6mer
106-126
0.008
3
6mer
2988-3014
0.004
2
7mer
745-764
0.004
0
RP4-798P15.3
hsa-miR-1294
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466953
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-129
0.027
6
6mer
5894-5916
0.004
5
6mer
2671-2692
0.002
6
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