LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_007166
hsa-miR-1294
0.804
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015109
Biotype: transcript isomorph
Gene id: XLOC_007166
Gene Name: XLOC_007166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4758-4782
0.016
2
8mer
2564-2589
0.010
1
7mer
2764-2789
0.004
2
6mer
1273-1295
0.002
0
6mer
3520-3540
0.001
0
XLOC_000482
hsa-miR-1294
0.803
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001215
Biotype: transcript isomorph
Gene id: XLOC_000482
Gene Name: XLOC_000482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-524
0.034
2
RP3-333B15.5
hsa-miR-1294
0.802
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611020
Biotype: lincRNA
Gene id: ENSG00000273838
Gene Name: RP3-333B15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-314
0.028
0
6mer
331-358
0.006
1
RP11-255A11.2
hsa-miR-1294
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420315
Biotype: antisense
Gene id: ENSG00000228072
Gene Name: RP11-255A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-54
0.034
0
XLOC_013771
hsa-miR-1294
0.801
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028418
Biotype: transcript isomorph
Gene id: XLOC_013771
Gene Name: XLOC_013771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2118-2136
0.016
Not Conserved
7mer
871-894
0.009
Not Conserved
7mer
580-598
0.005
Not Conserved
7mer
2954-2973
0.002
Not Conserved
CTA-243E7.3
hsa-miR-1294
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624101
Biotype: antisense
Gene id: ENSG00000279548
Gene Name: CTA-243E7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1758-1776
0.031
0
6mer
1897-1918
0.003
1
XLOC_010670
hsa-miR-1294
0.801
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-596
0.028
8
7mer
1321-1341
0.003
0
6mer
1536-1550
0.003
0
XLOC_004198
hsa-miR-1294
0.800
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008682
Biotype: transcript isomorph
Gene id: XLOC_004198
Gene Name: XLOC_004198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-140
0.029
0
6mer
1041-1065
0.002
0
6mer
928-943
0.002
0
MIR497HG
hsa-miR-1294
0.800
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572453
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-73
0.029
10
6mer
866-888
0.004
9
LOC100128885
hsa-miR-1294
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2718-2725
0.026
0
6mer
1671-1695
0.002
0
6mer
2188-2210
0.002
0
6mer
2308-2325
0.002
0
6mer
1731-1754
0.001
0
RP11-524F11.1
hsa-miR-1294
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582325
Biotype: antisense
Gene id: ENSG00000265511
Gene Name: RP11-524F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-114
0.033
3
XLOC_000709
hsa-miR-1294
0.799
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001392
Biotype: transcript isomorph
Gene id: XLOC_000709
Gene Name: XLOC_000709
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-148
0.033
3
RP5-1065J22.8
hsa-miR-1294
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608574
Biotype: antisense
Gene id: ENSG00000273382
Gene Name: RP5-1065J22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-292
0.019
2
7mer
353-372
0.014
0
AP000442.1
hsa-miR-1294
0.799
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531311
Biotype: antisense
Gene id: ENSG00000255139
Gene Name: AP000442.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-236
0.033
0
RP11-443N24.4
hsa-miR-1294
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544399
Biotype: lincRNA
Gene id: ENSG00000256256
Gene Name: RP11-443N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-329
0.033
3
AC004870.4
hsa-miR-1294
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445615
Biotype: lincRNA
Gene id: ENSG00000223829
Gene Name: AC004870.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
576-595
0.033
1
LINC01511
hsa-miR-1294
0.797
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523692
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
805-819
0.031
1
6mer
736-756
0.002
0
LOC100507634
hsa-miR-1294
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038320.1
Biotype: lincRNA
Gene id: NR_038320.1 (gene)
Gene Name: LOC100507634
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1753-1771
0.033
0
RP11-16N2.1
hsa-miR-1294
0.796
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506379
Biotype: lincRNA
Gene id: ENSG00000240152
Gene Name: RP11-16N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-224
0.030
1
6mer
534-561
0.003
Not Conserved
CTC-459F4.3
hsa-miR-1294
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
601-621
0.017
0
6mer
611-629
0.016
0
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