LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-69H14.6
hsa-miR-1294
0.811
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619069
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-382
0.028
0
6mer
334-359
0.007
3
RP11-675M1.2
hsa-miR-1294
0.811
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531176
Biotype: antisense
Gene id: ENSG00000254705
Gene Name: RP11-675M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-75
0.026
2
7mer
622-647
0.005
0
6mer
715-738
0.004
2
RP11-69I8.2
hsa-miR-1294
0.811
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419695
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
120-134
0.032
Not Conserved
6mer
554-579
0.003
Not Conserved
GABPB1-AS1
hsa-miR-1294
0.810
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5261-5283
0.017
1
7mer
4181-4203
0.007
2
7mer
15479-15498
0.003
0
6mer
1760-1773
0.002
3
6mer
3935-3958
0.001
1
6mer
6542-6559
0.001
1
6mer
14304-14319
0.001
0
6mer
12581-12596
0.001
1
6mer
5921-5941
0.001
1
KCNK15-AS1
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427598
Biotype: antisense
Gene id: ENSG00000244558
Gene Name: KCNK15-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-91
0.034
1
XLOC_012728
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-75
0.018
3
7mer
4498-4515
0.012
0
6mer
2228-2246
0.002
1
6mer
1561-1585
0.001
1
6mer
3720-3740
0.001
1
6mer
3797-3823
0.001
1
AC005307.1
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000567877
Biotype: lincRNA
Gene id: ENSG00000260725
Gene Name: AC005307.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
552-577
0.034
0
AC046143.3
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447139
Biotype: antisense
Gene id: ENSG00000229334
Gene Name: AC046143.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
941-963
0.034
4
CTA-212A2.4
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623420
Biotype: lincRNA
Gene id: ENSG00000279927
Gene Name: CTA-212A2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-58
0.015
1
7mer
2546-2560
0.009
2
7mer
2797-2810
0.008
0
6mer
2036-2051
0.001
1
XLOC_009651
hsa-miR-1294
0.809
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-383
0.034
1
XLOC_009577
hsa-miR-1294
0.808
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019778
Biotype: transcript isomorph
Gene id: XLOC_009577
Gene Name: XLOC_009577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7101-7114
0.005
0
7mer
6083-6101
0.004
1
6mer
7792-7810
0.004
1
7mer
2189-2215
0.004
2
7mer
6424-6450
0.004
0
6mer
7191-7214
0.003
2
6mer
5763-5788
0.002
3
7mer
3824-3845
0.002
1
6mer
6728-6754
0.001
0
6mer
4782-4798
0.001
1
6mer
6565-6583
0.001
3
6mer
3197-3212
0.001
1
6mer
2556-2576
0.001
0
6mer
5054-5073
0.001
3
RP11-574K11.5
hsa-miR-1294
0.808
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434147
Biotype: antisense
Gene id: ENSG00000224195
Gene Name: RP11-574K11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-420
0.034
3
RP4-798P15.3
hsa-miR-1294
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-129
0.027
6
6mer
5675-5702
0.003
1
6mer
5175-5197
0.003
5
6mer
2668-2689
0.002
6
RP4-647J21.1
hsa-miR-1294
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000568457
Biotype: sense_overlapping
Gene id: ENSG00000260997
Gene Name: RP4-647J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-329
0.024
0
7mer
1419-1443
0.007
1
6mer
475-497
0.003
1
RP11-488C13.5
hsa-miR-1294
0.807
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556072
Biotype: lincRNA
Gene id: ENSG00000258301
Gene Name: RP11-488C13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-133
0.019
1
7mer
187-207
0.011
2
6mer
1402-1423
0.003
0
6mer
776-801
0.001
0
RP11-375O18.2
hsa-miR-1294
0.806
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413352
Biotype: lincRNA
Gene id: ENSG00000233086
Gene Name: RP11-375O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-255
0.027
3
6mer
492-506
0.004
1
6mer
1621-1646
0.003
0
RP11-586L23.1
hsa-miR-1294
0.805
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514347
Biotype: lincRNA
Gene id: ENSG00000248747
Gene Name: RP11-586L23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
881-894
0.018
1
9mer
114-141
0.016
0
XLOC_011515
hsa-miR-1294
0.805
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024148
Biotype: transcript isomorph
Gene id: XLOC_011515
Gene Name: XLOC_011515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1738-1755
0.024
0
8mer+wobble
85-103
0.005
0
6mer
321-340
0.002
0
6mer
906-928
0.002
3
LINC01193
hsa-miR-1294
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557312
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-382
0.028
0
6mer
334-359
0.006
3
XLOC_008339
hsa-miR-1294
0.804
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017756
Biotype: transcript isomorph
Gene id: XLOC_008339
Gene Name: XLOC_008339
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-222
0.034
0
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