LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
LINC00487
hsa-miR-1294
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000382045
Biotype: lincRNA
Gene id: ENSG00000205837
Gene Name: LINC00487
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1567-1592
0.030
0
6mer
827-836
0.003
0
6mer
1015-1023
0.003
1
LARGE-AS1
hsa-miR-1294
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000448275
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-406
0.035
1
XLOC_010692
hsa-miR-1294
0.816
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022085
Biotype: transcript isomorph
Gene id: XLOC_010692
Gene Name: XLOC_010692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-365
0.018
2
7mer
71-98
0.012
1
6mer
206-216
0.004
1
XLOC_004458
hsa-miR-1294
0.816
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010734
Biotype: transcript isomorph
Gene id: XLOC_004458
Gene Name: XLOC_004458
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.035
1
LUCAT1
hsa-miR-1294
0.816
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511918
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.022
0
7mer
696-717
0.013
0
RP4-635E18.8
hsa-miR-1294
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607145
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
563-580
0.029
7
6mer
517-526
0.004
6
6mer
436-454
0.002
Not Conserved
CTD-3105H18.7
hsa-miR-1294
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000420038
Biotype: antisense
Gene id: ENSG00000234848
Gene Name: CTD-3105H18.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-34
0.035
0
LINC00277
hsa-miR-1294
0.815
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558369
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
363-388
0.029
3
6mer
416-432
0.006
2
RP11-802F5.1
hsa-miR-1294
0.815
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527440
Biotype: lincRNA
Gene id: ENSG00000254885
Gene Name: RP11-802F5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-323
0.035
0
LINC01307
hsa-miR-1294
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444327
Biotype: lincRNA
Gene id: ENSG00000231671
Gene Name: LINC01307
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-587
0.019
1
7mer
166-186
0.011
1
6mer
136-159
0.005
1
XLOC_001666
hsa-miR-1294
0.813
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002721
Biotype: transcript isomorph
Gene id: XLOC_001666
Gene Name: XLOC_001666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-890
0.024
1
7mer
268-283
0.010
1
XLOC_008959
hsa-miR-1294
0.813
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018052
Biotype: transcript isomorph
Gene id: XLOC_008959
Gene Name: XLOC_008959
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-669
0.019
2
7mer
231-256
0.013
2
6mer
422-444
0.003
Not Conserved
LOC101927881
hsa-miR-1294
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110278.1
Biotype: lincRNA
Gene id: NR_110278.1 (gene)
Gene Name: LOC101927881
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
870-895
0.024
1
7mer
273-288
0.010
1
XLOC_005181
hsa-miR-1294
0.813
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011701
Biotype: transcript isomorph
Gene id: XLOC_005181
Gene Name: XLOC_005181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1021-1046
0.018
1
7mer
862-881
0.006
1
6mer
249-274
0.005
1
6mer
414-432
0.003
0
6mer
1151-1177
0.003
2
SLIT1-AS1
hsa-miR-1294
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424428
Biotype: antisense
Gene id: ENSG00000234855
Gene Name: SLIT1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
653-676
0.035
1
LINC00683
hsa-miR-1294
0.812
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579781
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-75
0.018
3
7mer
2862-2879
0.012
0
6mer
592-610
0.003
1
6mer
2084-2104
0.001
1
6mer
2161-2187
0.001
1
CTD-2515H24.4
hsa-miR-1294
0.812
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566990
Biotype: lincRNA
Gene id: ENSG00000261265
Gene Name: CTD-2515H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-759
0.033
0
6mer
625-642
0.002
0
XLOC_004700
hsa-miR-1294
0.812
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010232
Biotype: transcript isomorph
Gene id: XLOC_004700
Gene Name: XLOC_004700
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
484-493
0.005
0
7mer
2317-2329
0.004
Not Conserved
7mer
5219-5227
0.003
Not Conserved
6mer
6847-6860
0.003
Not Conserved
7mer
1346-1361
0.003
Not Conserved
6mer
801-817
0.002
Not Conserved
6mer
612-621
0.002
Not Conserved
6mer
1938-1951
0.001
Not Conserved
6mer
5561-5580
0.001
Not Conserved
6mer
3845-3871
0.001
Not Conserved
6mer
3649-3661
0.001
Not Conserved
6mer
4517-4536
0.001
Not Conserved
6mer
1550-1567
0.001
Not Conserved
6mer
5027-5040
0.001
Not Conserved
6mer
3036-3051
0.001
Not Conserved
6mer
3597-3620
0.001
Not Conserved
6mer
5459-5478
0.001
Not Conserved
6mer
4417-4432
0.001
Not Conserved
6mer
5209-5228
0.000
Not Conserved
6mer
5407-5422
0.000
Not Conserved
6mer
1528-1545
0.000
Not Conserved
XLOC_000162
hsa-miR-1294
0.811
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000039
Biotype: transcript isomorph
Gene id: XLOC_000162
Gene Name: XLOC_000162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1506-1519
0.035
1
RP11-284F21.8
hsa-miR-1294
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564032
Biotype: lincRNA
Gene id: ENSG00000260460
Gene Name: RP11-284F21.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1465-1491
0.029
1
6mer
225-249
0.004
0
6mer
714-732
0.001
1
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