LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-556G22.2
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511835
Biotype: antisense
Gene id: ENSG00000248343
Gene Name: RP11-556G22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-335
0.037
3
PRNT
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_024267.1
Biotype: sense
Gene id: NR_024267.1 (gene)
Gene Name: PRNT
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2172-2198
0.035
0
6mer
702-723
0.002
1
RP11-857B24.5
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555157
Biotype: antisense
Gene id: ENSG00000258949
Gene Name: RP11-857B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-328
0.037
1
AC072062.3
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602182
Biotype: antisense
Gene id: ENSG00000227769
Gene Name: AC072062.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-175
0.037
1
RP11-111F5.4
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1292-1315
0.026
0
6mer
210-225
0.010
0
7mer
2020-2039
0.001
Not Conserved
XLOC_001376
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004704
Biotype: transcript isomorph
Gene id: XLOC_001376
Gene Name: XLOC_001376
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-469
0.037
1
AC006460.2
hsa-miR-1294
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000411949
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-426
0.034
2
6mer
469-495
0.003
1
AC003973.4
hsa-miR-1294
0.832
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
652-665
0.037
0
AC022007.5
hsa-miR-1294
0.832
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1381-1400
0.020
0
6mer
1124-1145
0.011
0
7mer
110-133
0.007
Not Conserved
SHANK3
hsa-miR-1294
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6522-6538
0.014
8
6mer
6602-6628
0.005
8
8mer
1664-1681
0.005
2
7mer
5989-6008
0.005
4
6mer
6831-6858
0.003
3
6mer
5715-5737
0.003
9
6mer
4789-4808
0.001
8
6mer
5349-5367
0.001
0
MLIP-AS1
hsa-miR-1294
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000592093
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
130-144
0.017
0
7mer
266-289
0.011
1
7mer
217-235
0.009
1
DIAPH3-AS1
hsa-miR-1294
0.830
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435636
Biotype: antisense
Gene id: ENSG00000227528
Gene Name: DIAPH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-210
0.037
5
XLOC_013591
hsa-miR-1294
0.830
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028248
Biotype: transcript isomorph
Gene id: XLOC_013591
Gene Name: XLOC_013591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
530-537
0.037
Not Conserved
RP11-552E20.4
hsa-miR-1294
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447315
Biotype: lincRNA
Gene id: ENSG00000226070
Gene Name: RP11-552E20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-211
0.034
0
6mer
382-391
0.002
0
MEG3
hsa-miR-1294
0.829
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000523671
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1830-1856
0.023
4
6mer
2159-2167
0.011
5
6mer
785-808
0.002
1
6mer
1192-1212
0.002
1
LINC01002
hsa-miR-1294
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000423687
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-23
0.028
1
6mer
66-85
0.008
1
LINC01287
hsa-miR-1294
0.829
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-216
0.030
0
6mer
1557-1572
0.007
0
XLOC_001066
hsa-miR-1294
0.828
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001706
Biotype: transcript isomorph
Gene id: XLOC_001066
Gene Name: XLOC_001066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-284
0.027
0
7mer
225-241
0.010
0
AC011518.2
hsa-miR-1294
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593038
Biotype: lincRNA
Gene id: ENSG00000267133
Gene Name: AC011518.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-468
0.032
6
6mer
144-156
0.005
1
RP4-635E18.8
hsa-miR-1294
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612387
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-361
0.029
7
6mer
298-307
0.005
6
6mer
217-235
0.002
Not Conserved
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