LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-263K19.4
hsa-miR-1294
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436772
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-309
0.032
1
6mer
423-434
0.003
1
6mer
331-346
0.003
1
FLNB-AS1
hsa-miR-1294
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488720
Biotype: antisense
Gene id: ENSG00000244161
Gene Name: FLNB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-337
0.025
1
7mer
187-213
0.012
1
6mer
2125-2145
0.001
1
6mer
1961-1987
0.001
2
RP3-412A9.17
hsa-miR-1294
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12759-12779
0.014
0
7mer
13188-13207
0.007
1
6mer
16398-16413
0.003
0
6mer
5251-5267
0.003
7
6mer
4615-4633
0.002
1
6mer
1441-1457
0.002
2
6mer
6368-6387
0.002
1
7mer
1526-1545
0.002
0
6mer
10132-10155
0.001
0
6mer
7835-7856
0.001
1
6mer
9768-9788
0.001
0
6mer
10835-10855
0.001
Not Conserved
6mer
7867-7887
0.001
3
RP11-206L10.9
hsa-miR-1294
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443772
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-395
0.038
1
DIAPH3-AS1
hsa-miR-1294
0.839
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_109838.1
Biotype: antisense
Gene id: NR_109838.1 (gene)
Gene Name: DIAPH3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-362
0.038
5
RP11-752D24.2
hsa-miR-1294
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508813
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1884-1906
0.023
7
7mer
1991-1999
0.012
3
6mer
536-555
0.002
0
RP11-818O24.3
hsa-miR-1294
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576825
Biotype: antisense
Gene id: ENSG00000262777
Gene Name: RP11-818O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-212
0.028
1
6mer
262-280
0.009
1
LINC00491
hsa-miR-1294
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510145
Biotype: lincRNA
Gene id: ENSG00000250682
Gene Name: LINC00491
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-220
0.026
1
7mer
6-27
0.007
1
6mer
539-562
0.004
1
CTD-2291D10.4
hsa-miR-1294
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594318
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-360
0.037
0
RP11-637A17.2
hsa-miR-1294
0.837
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500695
Biotype: lincRNA
Gene id: ENSG00000247363
Gene Name: RP11-637A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-44
0.033
2
6mer
1481-1501
0.002
1
6mer
1437-1457
0.002
1
RP13-631K18.3
hsa-miR-1294
0.837
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000476130
Biotype: lincRNA
Gene id: ENSG00000254991
Gene Name: RP13-631K18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-799
0.037
3
AC006460.2
hsa-miR-1294
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421437
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-517
0.035
2
6mer
560-584
0.002
1
CFLAR-AS1
hsa-miR-1294
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594911
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
389-410
0.037
3
XLOC_013934
hsa-miR-1294
0.836
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029012
Biotype: transcript isomorph
Gene id: XLOC_013934
Gene Name: XLOC_013934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-61
0.037
1
RP11-360A18.2
hsa-miR-1294
0.836
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561476
Biotype: lincRNA
Gene id: ENSG00000261432
Gene Name: RP11-360A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-228
0.023
2
7mer
983-997
0.007
1
6mer
367-384
0.003
3
6mer
2173-2198
0.003
2
6mer
2102-2123
0.002
1
LINC01095
hsa-miR-1294
0.836
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513023
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-325
0.037
1
XLOC_006468
hsa-miR-1294
0.836
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-171
0.032
0
7mer
1809-1823
0.004
0
6mer
2133-2146
0.001
0
XLOC_006731
hsa-miR-1294
0.835
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015245
Biotype: transcript isomorph
Gene id: XLOC_006731
Gene Name: XLOC_006731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-396
0.037
1
UG0898H09
hsa-miR-1294
0.834
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4518-4545
0.022
2
7mer
2397-2417
0.009
3
6mer
6342-6358
0.004
4
6mer
433-454
0.002
Not Conserved
RP11-263K19.4
hsa-miR-1294
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447623
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-483
0.033
1
6mer
505-520
0.004
1
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