LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-1294


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_007543
hsa-miR-1294
0.849
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016147
Biotype: transcript isomorph
Gene id: XLOC_007543
Gene Name: XLOC_007543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2401-2420
0.037
2
6mer
1269-1295
0.002
1
RP11-295M18.6
hsa-miR-1294
0.848
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609941
Biotype: lincRNA
Gene id: ENSG00000272823
Gene Name: RP11-295M18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-525
0.039
2
MEG3
hsa-miR-1294
0.848
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398461
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3336-3359
0.036
5
6mer
2529-2546
0.001
1
6mer
1274-1295
0.001
1
RP11-405K6.1
hsa-miR-1294
0.848
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526327
Biotype: lincRNA
Gene id: ENSG00000254456
Gene Name: RP11-405K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-270
0.032
1
6mer
438-462
0.006
1
LL22NC03-22D1.1
hsa-miR-1294
0.848
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28667-28685
0.014
Not Conserved
7mer
17700-17719
0.004
1
6mer
28-47
0.003
1
6mer
28182-28206
0.003
1
6mer
10435-10444
0.002
1
6mer
12635-12655
0.002
1
6mer
1406-1424
0.002
1
6mer
7018-7031
0.002
3
6mer
19573-19590
0.002
2
6mer
23951-23967
0.001
0
6mer
24204-24226
0.001
1
6mer
14176-14191
0.001
1
8mer+mismatch
1956-1980
0.001
Not Conserved
6mer
2876-2895
0.001
0
LINC00635
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497811
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
528-554
0.039
1
RP11-386G11.3
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549516
Biotype: antisense
Gene id: ENSG00000258283
Gene Name: RP11-386G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-87
0.039
7
RP11-384P7.7
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-395
0.026
2
6mer
3465-3485
0.010
2
6mer
2714-2740
0.002
0
XLOC_005332
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1124-1136
0.030
0
6mer
190-202
0.009
1
RP11-411K7.1
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2880-2901
0.035
1
6mer
11-32
0.004
1
RP11-770J1.5
hsa-miR-1294
0.847
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531742
Biotype: antisense
Gene id: ENSG00000254873
Gene Name: RP11-770J1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1922-1945
0.036
7
6mer
38-57
0.003
1
SHANK3
hsa-miR-1294
0.846
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6737-6753
0.016
8
7mer
6204-6223
0.005
4
8mer
1852-1869
0.005
2
6mer
6817-6843
0.005
8
6mer
7046-7073
0.003
3
6mer
5930-5952
0.003
9
6mer
5004-5023
0.001
8
6mer
5564-5582
0.001
0
RP11-389C8.2
hsa-miR-1294
0.845
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2292-2309
0.036
2
7mer
1116-1141
0.003
1
SNHG18
hsa-miR-1294
0.845
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_045196.2
Biotype: lincRNA
Gene id: NR_045196.2 (gene)
Gene Name: SNHG18
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1060-1081
0.020
1
8mer
1253-1275
0.010
1
7mer
1176-1195
0.009
1
CFLAR-AS1
hsa-miR-1294
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598453
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-297
0.038
3
CTA-228A9.3
hsa-miR-1294
0.843
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609162
Biotype: lincRNA
Gene id: ENSG00000272720
Gene Name: CTA-228A9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-731
0.022
0
7mer
1165-1189
0.016
0
CTA-941F9.10
hsa-miR-1294
0.843
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4316-4335
0.011
0
8mer
16367-16385
0.010
0
6mer
873-895
0.003
0
6mer
18915-18934
0.002
1
6mer
21738-21757
0.002
0
6mer
7246-7264
0.002
0
6mer
5279-5302
0.001
1
6mer
21490-21505
0.001
1
6mer
21849-21866
0.001
0
6mer
2180-2204
0.001
0
6mer
3972-3987
0.001
0
6mer
19112-19124
0.001
0
6mer
12050-12067
0.001
0
XLOC_005909
hsa-miR-1294
0.843
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011143
Biotype: transcript isomorph
Gene id: XLOC_005909
Gene Name: XLOC_005909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1015
0.021
1
7mer
2044-2069
0.010
1
6mer
5117-5144
0.007
4
RP11-692D12.1
hsa-miR-1294
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502790
Biotype: antisense
Gene id: ENSG00000250220
Gene Name: RP11-692D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
342-368
0.038
3
RP11-770J1.5
hsa-miR-1294
0.842
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534438
Biotype: antisense
Gene id: ENSG00000254873
Gene Name: RP11-770J1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-134
0.035
7
6mer
311-335
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept