LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
AC026904.1
hsa-miR-1294
0.863
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000430626
Biotype: lincRNA
Gene id: ENSG00000233858
Gene Name: AC026904.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3193-3207
0.031
0
8mer
837-864
0.008
1
6mer
772-791
0.002
1
TTTY22
hsa-miR-1294
0.863
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000445253
Biotype: lincRNA
Gene id: ENSG00000224075
Gene Name: TTTY22
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-204
0.023
Not Conserved
8mer
280-304
0.018
Not Conserved
RP13-379L11.2
hsa-miR-1294
0.861
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000371169
Biotype: lincRNA
Gene id: ENSG00000203971
Gene Name: RP13-379L11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-77
0.015
1
7mer
1685-1707
0.014
0
8mer
1202-1215
0.010
1
6mer
1289-1313
0.001
1
XLOC_005753
hsa-miR-1294
0.861
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4162-4180
0.026
0
7mer
3864-3889
0.009
0
7mer
3899-3906
0.005
Not Conserved
AP000442.1
hsa-miR-1294
0.859
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531108
Biotype: antisense
Gene id: ENSG00000255139
Gene Name: AP000442.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-394
0.040
0
USP3-AS1
hsa-miR-1294
0.859
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560067
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-256
0.026
2
7mer
86-103
0.013
1
6mer
282-306
0.002
Not Conserved
RP11-503D12.1
hsa-miR-1294
0.858
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505050
Biotype: lincRNA
Gene id: ENSG00000250418
Gene Name: RP11-503D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-130
0.040
1
RP11-263K19.4
hsa-miR-1294
0.857
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454348
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-40
0.037
9
6mer
158-173
0.003
1
CTD-2231E14.8
hsa-miR-1294
0.857
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597983
Biotype: antisense
Gene id: ENSG00000269243
Gene Name: CTD-2231E14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-193
0.024
0
7mer
571-591
0.006
1
6mer
2598-2621
0.004
0
6mer
2786-2803
0.003
0
7mer
1554-1573
0.002
0
6mer
1889-1912
0.001
1
6mer
1432-1459
0.001
0
LINC01511
hsa-miR-1294
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503067
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-331
0.036
1
6mer
248-268
0.004
0
RP11-574H6.1
hsa-miR-1294
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569928
Biotype: lincRNA
Gene id: ENSG00000261036
Gene Name: RP11-574H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-96
0.040
0
RP11-145H9.3
hsa-miR-1294
0.856
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440848
Biotype: lincRNA
Gene id: ENSG00000228718
Gene Name: RP11-145H9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
602-629
0.029
1
6mer
159-185
0.004
0
6mer
178-196
0.004
0
6mer
255-273
0.003
2
RP11-168K9.2
hsa-miR-1294
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-484
0.033
1
6mer
2287-2308
0.004
1
6mer
397-416
0.003
0
RP11-229P13.25
hsa-miR-1294
0.855
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569497
Biotype: sense_overlapping
Gene id: ENSG00000260190
Gene Name: RP11-229P13.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-785
0.015
0
7mer
424-449
0.011
0
6mer
559-584
0.008
1
6mer
132-153
0.005
0
XLOC_000340
hsa-miR-1294
0.855
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001092
Biotype: transcript isomorph
Gene id: XLOC_000340
Gene Name: XLOC_000340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1033-1060
0.037
1
6mer
420-430
0.002
3
RP11-491F9.1
hsa-miR-1294
0.854
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564875
Biotype: antisense
Gene id: ENSG00000260614
Gene Name: RP11-491F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-578
0.040
1
AC100848.1
hsa-miR-1294
0.853
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000417298
Biotype: lincRNA
Gene id: ENSG00000236392
Gene Name: AC100848.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-430
0.023
3
6mer
605-630
0.008
4
7mer
200-225
0.006
1
6mer
342-367
0.002
1
LINC00994
hsa-miR-1294
0.852
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485805
Biotype: lincRNA
Gene id: ENSG00000189196
Gene Name: LINC00994
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
344-369
0.030
1
8mer
1181-1197
0.010
1
CFLAR-AS1
hsa-miR-1294
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415011
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
266-287
0.039
3
CFLAR-AS1
hsa-miR-1294
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_040030.1
Biotype: antisense
Gene id: NR_040030.1 (gene)
Gene Name: CFLAR-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
266-287
0.039
3
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