LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-334E6.12
hsa-miR-1294
0.873
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000578216
Biotype: sense_intronic
Gene id: ENSG00000263873
Gene Name: RP11-334E6.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
572-596
0.015
2
7mer
359-381
0.014
1
7mer
392-415
0.009
2
8mer+wobble
134-154
0.004
1
RP11-210M15.1
hsa-miR-1294
0.872
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000548231
Biotype: antisense
Gene id: ENSG00000258010
Gene Name: RP11-210M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1780-1799
0.014
Not Conserved
6mer
1847-1872
0.004
Not Conserved
6mer
1804-1823
0.004
Not Conserved
6mer
1544-1565
0.003
Not Conserved
6mer
1597-1620
0.003
Not Conserved
6mer
1680-1702
0.003
Not Conserved
6mer
1472-1497
0.002
Not Conserved
6mer
1425-1441
0.002
Not Conserved
6mer
1227-1250
0.002
0
6mer
1124-1138
0.002
1
6mer
1481-1506
0.002
Not Conserved
6mer
1398-1412
0.002
Not Conserved
LINC00957
hsa-miR-1294
0.872
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441052
Biotype: lincRNA
Gene id: ENSG00000235314
Gene Name: LINC00957
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2093-2115
0.037
1
6mer
2310-2330
0.003
1
6mer
1243-1259
0.001
1
6mer
1110-1130
0.001
0
RP11-496N12.6
hsa-miR-1294
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433058
Biotype: sense_intronic
Gene id: ENSG00000234476
Gene Name: RP11-496N12.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
263-287
0.042
1
ADAMTS9-AS2
hsa-miR-1294
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485174
Biotype: antisense
Gene id: ENSG00000241684
Gene Name: ADAMTS9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-445
0.042
5
LINC01412
hsa-miR-1294
0.871
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413525
Biotype: lincRNA
Gene id: ENSG00000232606
Gene Name: LINC01412
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-40
0.042
7
AC006460.2
hsa-miR-1294
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428032
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-164
0.039
2
6mer
207-233
0.003
1
RP11-25K19.1
hsa-miR-1294
0.870
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523683
Biotype: antisense
Gene id: ENSG00000167912
Gene Name: RP11-25K19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-78
0.042
10
XLOC_010133
hsa-miR-1294
0.870
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-888
0.042
0
RP11-567J20.1
hsa-miR-1294
0.870
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523038
Biotype: lincRNA
Gene id: ENSG00000253702
Gene Name: RP11-567J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-275
0.042
0
RP11-47L3.1
hsa-miR-1294
0.868
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-357
0.041
0
RP11-121C6.5
hsa-miR-1294
0.867
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610448
Biotype: lincRNA
Gene id: ENSG00000276272
Gene Name: RP11-121C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
522-536
0.036
1
6mer
967-982
0.004
1
6mer
441-466
0.001
0
XLOC_001963
hsa-miR-1294
0.867
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-216
0.030
1
7mer
988-1014
0.012
1
RP11-888D10.4
hsa-miR-1294
0.866
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609701
Biotype: sense_intronic
Gene id: ENSG00000273284
Gene Name: RP11-888D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
815-830
0.041
3
RP11-429P3.5
hsa-miR-1294
0.866
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566770
Biotype: antisense
Gene id: ENSG00000260381
Gene Name: RP11-429P3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-632
0.041
1
MIR663AHG
hsa-miR-1294
0.865
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000595300
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-392
0.041
1
MAMDC2-AS1
hsa-miR-1294
0.865
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585478
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
905-925
0.041
0
XLOC_002585
hsa-miR-1294
0.865
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3867-3892
0.019
1
7mer
225-251
0.013
1
7mer
2439-2457
0.004
1
6mer
4042-4065
0.002
4
7mer
2017-2039
0.001
0
6mer
2525-2537
0.001
1
7mer
2030-2049
0.001
0
6mer
2458-2481
0.000
Not Conserved
RP4-742J24.2
hsa-miR-1294
0.864
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439529
Biotype: antisense
Gene id: ENSG00000236526
Gene Name: RP4-742J24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1319-1334
0.022
1
8mer
970-994
0.012
1
6mer
1333-1350
0.004
1
6mer
752-771
0.003
0
RP11-166A12.1
hsa-miR-1294
0.864
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511194
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-44
0.038
1
6mer
717-732
0.003
1
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