LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
CTBP1-AS2
hsa-miR-1294
0.880
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1989-2012
0.037
1
6mer
790-805
0.006
1
AF131215.9
hsa-miR-1294
0.880
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602575
Biotype: sense_intronic
Gene id: ENSG00000269918
Gene Name: AF131215.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-202
0.043
0
XLOC_009445
hsa-miR-1294
0.880
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019641
Biotype: transcript isomorph
Gene id: XLOC_009445
Gene Name: XLOC_009445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5680-5688
0.025
0
7mer
2022-2042
0.005
Not Conserved
6mer
4797-4819
0.003
1
6mer
5023-5046
0.002
0
6mer
621-641
0.002
0
8mer
1738-1765
0.002
Not Conserved
7mer
2622-2640
0.002
0
6mer
2649-2667
0.001
0
6mer
1791-1814
0.001
0
C9orf106
hsa-miR-1294
0.880
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000316786
Biotype: lincRNA
Gene id: ENSG00000179082
Gene Name: C9orf106
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-85
0.019
Not Conserved
7mer
2795-2812
0.012
Not Conserved
7mer
1749-1775
0.004
2
6mer
2247-2272
0.004
1
6mer
853-874
0.003
2
6mer
2868-2883
0.002
Not Conserved
LINC01002
hsa-miR-1294
0.879
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619047
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-184
0.024
1
7mer
58-77
0.012
1
6mer
227-246
0.007
1
LINC01002
hsa-miR-1294
0.878
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611361
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-196
0.024
1
7mer
70-89
0.012
1
6mer
239-258
0.007
1
XLOC_006941
hsa-miR-1294
0.877
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014872
Biotype: transcript isomorph
Gene id: XLOC_006941
Gene Name: XLOC_006941
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-281
0.027
2
8mer
325-349
0.016
1
CTD-2541M15.4
hsa-miR-1294
0.877
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-517
0.038
2
6mer
83-108
0.005
1
XLOC_008998
hsa-miR-1294
0.876
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018647
Biotype: transcript isomorph
Gene id: XLOC_008998
Gene Name: XLOC_008998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-275
0.029
0
6mer
422-447
0.009
1
6mer
321-328
0.004
1
AC007277.3
hsa-miR-1294
0.876
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423519
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
506-531
0.037
1
6mer
111-136
0.005
0
MEG3
hsa-miR-1294
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522618
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
872-895
0.043
5
XLOC_003775
hsa-miR-1294
0.875
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008319
Biotype: transcript isomorph
Gene id: XLOC_003775
Gene Name: XLOC_003775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
831-852
0.015
0
8mer
1250-1272
0.015
2
7mer
1379-1401
0.013
Not Conserved
LINC00221
hsa-miR-1294
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619530
Biotype: lincRNA
Gene id: ENSG00000270816
Gene Name: LINC00221
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1336-1354
0.031
1
7mer
1203-1227
0.012
0
XLOC_001776
hsa-miR-1294
0.875
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002726
Biotype: transcript isomorph
Gene id: XLOC_001776
Gene Name: XLOC_001776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2785-2805
0.024
1
8mer
329-353
0.019
1
LINC00567
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569854
Biotype: lincRNA
Gene id: ENSG00000259831
Gene Name: LINC00567
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-887
0.039
0
6mer
755-776
0.002
0
6mer
2579-2606
0.001
0
CTC-479C5.6
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574912
Biotype: antisense
Gene id: ENSG00000263201
Gene Name: CTC-479C5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1151-1171
0.042
3
RP11-111F5.4
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429818
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
958-981
0.042
0
N4BP2L2-IT2
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4532-4543
0.039
2
6mer
3728-3736
0.003
0
CTD-3195I5.3
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571741
Biotype: antisense
Gene id: ENSG00000262692
Gene Name: CTD-3195I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-29
0.042
0
PRR7-AS1
hsa-miR-1294
0.874
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000425316
Biotype: antisense
Gene id: ENSG00000246334
Gene Name: PRR7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-210
0.028
3
8mer
75-92
0.006
0
6mer
14-29
0.004
1
6mer
220-243
0.003
1
6mer
243-259
0.001
0
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