LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP11-180M15.6
hsa-miR-1294
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619780
Biotype: lincRNA
Gene id: ENSG00000275963
Gene Name: RP11-180M15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-663
0.040
1
6mer
241-252
0.005
1
RP1-78B3.1
hsa-miR-1294
0.887
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6006-6030
0.020
2
7mer
515-534
0.018
1
6mer
1047-1069
0.004
1
6mer
3913-3932
0.002
1
6mer
5384-5408
0.001
1
PPP1R26-AS1
hsa-miR-1294
0.887
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455039
Biotype: antisense
Gene id: ENSG00000225361
Gene Name: PPP1R26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-623
0.044
1
LINC01002
hsa-miR-1294
0.886
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617707
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-186
0.025
1
7mer
60-79
0.013
1
6mer
229-248
0.007
1
LINC01005
hsa-miR-1294
0.886
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039987.1
Biotype: lincRNA
Gene id: NR_039987.1 (gene)
Gene Name: LINC01005
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-180
0.036
0
7mer
1818-1832
0.006
0
6mer
2142-2155
0.002
0
XLOC_004924
hsa-miR-1294
0.885
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11082-11103
0.013
0
7mer
1004-1031
0.011
0
7mer
9709-9732
0.008
1
6mer
10703-10717
0.003
Not Conserved
6mer
5970-5984
0.002
0
6mer
3402-3426
0.002
2
6mer
7004-7018
0.002
0
6mer
3567-3585
0.002
0
6mer
9194-9213
0.001
3
6mer
6300-6320
0.001
0
6mer
5862-5874
0.001
0
LINC01001
hsa-miR-1294
0.885
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000607448
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-322
0.027
1
6mer
1433-1454
0.006
0
8mer
685-709
0.006
Not Conserved
6mer
365-384
0.005
0
RP11-583F2.7
hsa-miR-1294
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577423
Biotype: processed_transcript
Gene id: ENSG00000280299
Gene Name: RP11-583F2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-361
0.034
10
7mer
99-113
0.008
1
6mer
371-382
0.002
0
ZFHX4-AS1
hsa-miR-1294
0.884
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024360.1
Biotype: antisense
Gene id: NR_024360.1 (gene)
Gene Name: ZFHX4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1598-1616
0.036
4
7mer
386-405
0.008
0
ZFHX4-AS1
hsa-miR-1294
0.884
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518143
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1596-1614
0.036
4
7mer
384-403
0.008
0
RP11-677I18.4
hsa-miR-1294
0.883
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524966
Biotype: lincRNA
Gene id: ENSG00000254580
Gene Name: RP11-677I18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-181
0.044
0
MUC19
hsa-miR-1294
0.883
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546043
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-41
0.044
1
RP11-3B12.2
hsa-miR-1294
0.883
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424515
Biotype: lincRNA
Gene id: ENSG00000237764
Gene Name: RP11-3B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-109
0.037
1
7mer
338-352
0.007
Not Conserved
CTD-2503I6.1
hsa-miR-1294
0.882
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550941
Biotype: antisense
Gene id: ENSG00000257120
Gene Name: CTD-2503I6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-66
0.044
0
XLOC_002335
hsa-miR-1294
0.882
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003408
Biotype: transcript isomorph
Gene id: XLOC_002335
Gene Name: XLOC_002335
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-442
0.036
2
6mer
173-192
0.007
1
RP1-116K23.1
hsa-miR-1294
0.882
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542804
Biotype: lincRNA
Gene id: ENSG00000256763
Gene Name: RP1-116K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-452
0.044
1
RP11-3B12.2
hsa-miR-1294
0.882
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110188.1
Biotype: lincRNA
Gene id: NR_110188.1 (gene)
Gene Name: RP11-3B12.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
70-92
0.037
1
7mer
321-335
0.006
Not Conserved
XLOC_006491
hsa-miR-1294
0.881
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014334
Biotype: transcript isomorph
Gene id: XLOC_006491
Gene Name: XLOC_006491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-39
0.043
0
LCMT1-AS2
hsa-miR-1294
0.881
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3962-3984
0.025
1
7mer
3706-3725
0.011
0
6mer
3373-3382
0.003
0
6mer
2620-2635
0.003
0
6mer
3934-3952
0.002
1
AC009133.12
hsa-miR-1294
0.881
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569981
Biotype: antisense
Gene id: ENSG00000238045
Gene Name: AC009133.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-559
0.016
3
9mer
1740-1762
0.007
0
6mer
89-115
0.007
7
8mer
1200-1218
0.007
1
7mer
1732-1759
0.002
0
6mer
1032-1058
0.002
4
6mer
660-683
0.002
3
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