LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
RP1-178F10.3
hsa-miR-1294
0.893
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1042-1064
0.028
1
8mer
836-859
0.008
1
6mer
600-618
0.004
1
6mer
121-138
0.004
0
6mer
1981-1998
0.002
1
MEG3
hsa-miR-1294
0.893
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000524035
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2737-2760
0.042
5
6mer
479-500
0.002
1
6mer
1734-1751
0.001
1
RP11-175O19.4
hsa-miR-1294
0.893
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3088-3108
0.040
10
6mer
3312-3327
0.006
4
LINC01107
hsa-miR-1294
0.893
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446979
Biotype: lincRNA
Gene id: ENSG00000225493
Gene Name: LINC01107
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1602-1625
0.021
0
7mer
233-258
0.009
2
7mer
1640-1658
0.005
0
6mer
657-677
0.004
4
7mer
276-291
0.003
Not Conserved
6mer
1904-1919
0.002
0
6mer
239-266
0.002
0
NPHP3-AS1
hsa-miR-1294
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489343
Biotype: antisense
Gene id: ENSG00000248724
Gene Name: NPHP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2619-2639
0.045
Not Conserved
AC009303.1
hsa-miR-1294
0.892
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585381
Biotype: antisense
Gene id: ENSG00000235066
Gene Name: AC009303.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
996-1019
0.024
2
8mer
682-706
0.021
3
RP11-108M9.3
hsa-miR-1294
0.892
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
721-742
0.023
1
8mer+wobble
37-64
0.022
1
XXbac-BPG254F23.7
hsa-miR-1294
0.892
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448198
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-310
0.045
0
RP5-875O13.1
hsa-miR-1294
0.892
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614408
Biotype: pseudogene
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-108
0.023
1
8mer+wobble
765-792
0.022
1
XLOC_013040
hsa-miR-1294
0.891
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026991
Biotype: transcript isomorph
Gene id: XLOC_013040
Gene Name: XLOC_013040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1030-1051
0.032
6
7mer
12-29
0.009
1
6mer
675-687
0.004
1
XLOC_011766
hsa-miR-1294
0.891
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024443
Biotype: transcript isomorph
Gene id: XLOC_011766
Gene Name: XLOC_011766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-199
0.036
0
7mer
732-749
0.009
0
LINC00174
hsa-miR-1294
0.890
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3948-3971
0.017
0
7mer
2757-2776
0.006
0
7mer
2011-2030
0.005
1
6mer
3703-3724
0.003
1
7mer
3218-3241
0.003
0
6mer
654-670
0.002
Not Conserved
7mer
1880-1899
0.002
0
6mer
644-653
0.002
Not Conserved
6mer
538-552
0.002
0
6mer
1289-1308
0.001
Not Conserved
6mer
1754-1774
0.001
1
6mer
1125-1139
0.001
0
6mer
1089-1112
0.000
Not Conserved
RP11-325F22.5
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453666
Biotype: lincRNA
Gene id: ENSG00000225329
Gene Name: RP11-325F22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-152
0.041
1
6mer
6-23
0.003
0
LINC01002
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000621634
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-192
0.024
1
7mer
66-85
0.014
1
6mer
235-254
0.007
1
XXbac-BPG254F23.7
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000621553
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-321
0.045
0
RP11-373D23.2
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604052
Biotype: sense_intronic
Gene id: ENSG00000270640
Gene Name: RP11-373D23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-77
0.045
8
RP5-1107A17.4
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572877
Biotype: sense_intronic
Gene id: ENSG00000263120
Gene Name: RP5-1107A17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2160-2180
0.040
1
6mer
1809-1821
0.002
0
6mer
2065-2088
0.002
0
RPARP-AS1
hsa-miR-1294
0.889
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597488
Biotype: retained_intron
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-94
0.032
1
7mer
206-229
0.009
0
6mer
340-353
0.004
0
DIAPH3-AS1
hsa-miR-1294
0.888
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422052
Biotype: antisense
Gene id: ENSG00000227528
Gene Name: DIAPH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-171
0.044
5
XLOC_013018
hsa-miR-1294
0.888
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026966
Biotype: transcript isomorph
Gene id: XLOC_013018
Gene Name: XLOC_013018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-137
0.044
1
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