LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1294


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Gene
miRNA
Score
DIANA Links
XLOC_004144
hsa-miR-1294
0.901
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008639
Biotype: transcript isomorph
Gene id: XLOC_004144
Gene Name: XLOC_004144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2956-2974
0.021
0
9mer
2488-2507
0.016
1
8mer
2635-2656
0.004
1
7mer
2795-2818
0.003
1
6mer
2028-2054
0.001
1
6mer
2578-2599
0.001
1
XLOC_011805
hsa-miR-1294
0.900
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024486
Biotype: transcript isomorph
Gene id: XLOC_011805
Gene Name: XLOC_011805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-464
0.042
1
6mer
398-413
0.005
1
LA16c-380A1.1
hsa-miR-1294
0.900
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567096
Biotype: lincRNA
Gene id: ENSG00000259840
Gene Name: LA16c-380A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-286
0.047
1
LINC00944
hsa-miR-1294
0.900
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545508
Biotype: lincRNA
Gene id: ENSG00000256128
Gene Name: LINC00944
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-74
0.047
1
XLOC_012560
hsa-miR-1294
0.899
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025743
Biotype: transcript isomorph
Gene id: XLOC_012560
Gene Name: XLOC_012560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.036
1
6mer
234-257
0.008
1
6mer
94-115
0.003
0
RP11-567M16.2
hsa-miR-1294
0.899
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587527
Biotype: lincRNA
Gene id: ENSG00000267409
Gene Name: RP11-567M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-498
0.042
1
6mer
236-261
0.004
1
LINC01000
hsa-miR-1294
0.899
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1295-1314
0.006
0
7mer
794-815
0.005
0
8mer
7886-7909
0.005
Not Conserved
7mer
678-697
0.005
1
6mer
509-528
0.004
1
7mer
4105-4124
0.002
0
7mer
3966-3991
0.002
0
7mer
2090-2113
0.002
Not Conserved
7mer
2836-2861
0.002
0
7mer
1559-1578
0.002
Not Conserved
6mer
1042-1061
0.002
0
7mer
1957-1976
0.002
Not Conserved
6mer
6802-6821
0.002
2
7mer
1705-1732
0.001
Not Conserved
6mer
833-846
0.001
0
6mer
3475-3494
0.001
0
7mer
2885-2910
0.001
Not Conserved
6mer
8062-8089
0.001
0
6mer
6865-6890
0.001
0
6mer
2351-2370
0.001
Not Conserved
6mer
4009-4026
0.000
0
XLOC_006008
hsa-miR-1294
0.899
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013372
Biotype: transcript isomorph
Gene id: XLOC_006008
Gene Name: XLOC_006008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
998-1010
0.041
1
6mer
1042-1063
0.005
1
LINC01002
hsa-miR-1294
0.899
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611194
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-23
0.036
1
6mer
66-85
0.010
1
AC068039.4
hsa-miR-1294
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-397
0.032
0
6mer
1987-2002
0.015
0
AC007679.3
hsa-miR-1294
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422116
Biotype: antisense
Gene id: ENSG00000225610
Gene Name: AC007679.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-756
0.046
1
RP11-79E3.3
hsa-miR-1294
0.898
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512581
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-56
0.025
0
7mer
358-369
0.021
1
RP11-573D15.3
hsa-miR-1294
0.897
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-248
0.046
1
AP003025.2
hsa-miR-1294
0.897
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414466
Biotype: antisense
Gene id: ENSG00000237654
Gene Name: AP003025.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3386-3407
0.038
3
6mer
673-697
0.003
1
6mer
1359-1377
0.002
4
6mer
2468-2484
0.002
1
6mer
3153-3171
0.001
1
RP11-115C21.2
hsa-miR-1294
0.896
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523225
Biotype: antisense
Gene id: ENSG00000246089
Gene Name: RP11-115C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-313
0.028
0
7mer
939-958
0.018
0
XXbac-BPG254F23.7
hsa-miR-1294
0.895
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585372
Biotype: retained_intron
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-579
0.046
0
MEG3
hsa-miR-1294
0.895
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046470.2
Biotype: lincRNA
Gene id: NR_046470.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1634-1657
0.036
5
7mer
193-218
0.006
0
6mer
83-106
0.004
1
AC104820.2
hsa-miR-1294
0.894
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435411
Biotype: lincRNA
Gene id: ENSG00000234663
Gene Name: AC104820.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1592-1612
0.024
1
8mer
117-141
0.022
1
RP4-760C5.3
hsa-miR-1294
0.894
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448580
Biotype: lincRNA
Gene id: ENSG00000231081
Gene Name: RP4-760C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-288
0.045
1
RP11-317M11.1
hsa-miR-1294
0.893
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506950
Biotype: sense_intronic
Gene id: ENSG00000249341
Gene Name: RP11-317M11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1294
Sequence: ugugagguuggcauuguugucu
MirBase ID: MIMAT0005884
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
797-808
0.045
2
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