LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC00504
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505089
Biotype: lincRNA
Gene id: ENSG00000248360
Gene Name: LINC00504
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4432-4449
0.025
0
RP11-708H21.4
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575159
Biotype: lincRNA
Gene id: ENSG00000262973
Gene Name: RP11-708H21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-45
0.014
1
6mer
219-242
0.011
1
LINC01105
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456327
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-784
0.021
1
6mer
509-519
0.003
2
6mer
570-595
0.001
0
RP11-348J24.2
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1423-1435
0.015
1
6mer
2429-2456
0.004
0
6mer
2876-2891
0.003
0
6mer
1112-1117
0.002
1
6mer
1551-1565
0.001
0
STEAP3-AS1
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454260
Biotype: antisense
Gene id: ENSG00000229867
Gene Name: STEAP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-522
0.019
1
7mer
1496-1511
0.004
2
6mer
377-398
0.002
0
STX18-AS1
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514763
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-158
0.025
1
MIR7-3HG
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589639
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-563
0.025
2
CTD-2091N23.1
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515153
Biotype: lincRNA
Gene id: ENSG00000251361
Gene Name: CTD-2091N23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-324
0.015
1
6mer
555-567
0.010
7
CTC-251D13.1
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606930
Biotype: antisense
Gene id: ENSG00000271795
Gene Name: CTC-251D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2761-2779
0.013
1
6mer
82-107
0.003
0
7mer
1991-1997
0.003
0
6mer
691-701
0.002
4
6mer
2390-2412
0.002
1
6mer
1992-2005
0.000
0
MIR7-3HG
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589368
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-405
0.025
2
RP11-18H7.1
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469070
Biotype: lincRNA
Gene id: ENSG00000242622
Gene Name: RP11-18H7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
885-911
0.025
2
RP11-122L9.1
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000622595
Biotype: lincRNA
Gene id: ENSG00000277930
Gene Name: RP11-122L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-31
0.025
1
XLOC_012288
hsa-miR-128-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025471
Biotype: transcript isomorph
Gene id: XLOC_012288
Gene Name: XLOC_012288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2998-3011
0.024
0
6mer
1246-1263
0.001
Not Conserved
XLOC_011826
hsa-miR-128-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024507
Biotype: transcript isomorph
Gene id: XLOC_011826
Gene Name: XLOC_011826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3920-3938
0.011
0
7mer
4526-4531
0.006
1
6mer
9512-9526
0.004
2
7mer
2031-2043
0.002
Not Conserved
7mer
6766-6785
0.001
1
7mer
2140-2155
0.001
Not Conserved
6mer
7281-7297
0.001
1
ADAM20P1
hsa-miR-128-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556964
Biotype: lincRNA
Gene id: ENSG00000259158
Gene Name: ADAM20P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
894-907
0.013
4
6mer
696-722
0.006
8
6mer
1059-1079
0.005
8
AP000233.4
hsa-miR-128-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000409758
Biotype: lincRNA
Gene id: ENSG00000222042
Gene Name: AP000233.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-518
0.025
0
AC007952.5
hsa-miR-128-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000399091
Biotype: lincRNA
Gene id: ENSG00000228157
Gene Name: AC007952.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1041-1059
0.025
1
RP11-474D1.3
hsa-miR-128-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1955-1981
0.016
0
7mer
693-712
0.006
1
6mer
932-944
0.002
0
6mer
1824-1847
0.001
1
RP11-296A18.3
hsa-miR-128-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366181
Biotype: lincRNA
Gene id: ENSG00000203356
Gene Name: RP11-296A18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-386
0.015
0
8mer
679-697
0.010
0
RP11-713P17.3
hsa-miR-128-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529070
Biotype: lincRNA
Gene id: ENSG00000204241
Gene Name: RP11-713P17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-492
0.025
2
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