LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-128-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP13-653N12.1
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_104647.1
Biotype: lincRNA
Gene id: NR_104647.1 (gene)
Gene Name: RP13-653N12.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.022
Not Conserved
6mer
663-686
0.004
1
LINC00922
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569736
Biotype: lincRNA
Gene id: ENSG00000261742
Gene Name: LINC00922
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-304
0.011
0
7mer
1181-1205
0.008
4
6mer
176-187
0.003
2
6mer
1224-1229
0.003
0
RP11-734K21.3
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000492300
Biotype: lincRNA
Gene id: ENSG00000244310
Gene Name: RP11-734K21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-186
0.025
0
XLOC_001979
hsa-miR-128-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004136
Biotype: transcript isomorph
Gene id: XLOC_001979
Gene Name: XLOC_001979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-707
0.011
0
7mer
78-105
0.011
1
6mer
814-836
0.003
1
RP1-65P5.5
hsa-miR-128-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525133
Biotype: lincRNA
Gene id: ENSG00000255375
Gene Name: RP1-65P5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-143
0.015
1
7mer
32-47
0.011
1
RP11-132M7.3
hsa-miR-128-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591225
Biotype: antisense
Gene id: ENSG00000228290
Gene Name: RP11-132M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
677-690
0.025
1
MIAT
hsa-miR-128-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453023
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-266
0.025
1
RP11-624M8.1
hsa-miR-128-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606334
Biotype: antisense
Gene id: ENSG00000237742
Gene Name: RP11-624M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-400
0.017
0
7mer
161-187
0.008
1
XLOC_001607
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003808
Biotype: transcript isomorph
Gene id: XLOC_001607
Gene Name: XLOC_001607
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-599
0.013
1
6mer
945-959
0.007
0
6mer
73-93
0.006
0
AC096669.1
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-522
0.025
0
RP11-142E9.1
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
661-679
0.015
1
7mer
1132-1144
0.006
0
6mer
252-271
0.003
0
6mer
2969-2978
0.002
0
GS1-600G8.5
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412485
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1096-1120
0.008
5
8mer
528-540
0.007
0
6mer
1411-1430
0.005
3
6mer
662-689
0.002
3
6mer
1025-1041
0.002
1
6mer
707-725
0.001
0
FAM53B-AS1
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432699
Biotype: antisense
Gene id: ENSG00000233334
Gene Name: FAM53B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-347
0.025
3
C14orf23
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548213
Biotype: lincRNA
Gene id: ENSG00000186960
Gene Name: C14orf23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-317
0.025
1
RP11-298J20.3
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449984
Biotype: antisense
Gene id: ENSG00000226899
Gene Name: RP11-298J20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
337-352
0.025
1
RP11-410D17.2
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500117
Biotype: lincRNA
Gene id: ENSG00000245768
Gene Name: RP11-410D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1699-1718
0.013
1
7mer
311-335
0.010
0
6mer
1277-1297
0.002
3
RP4-565E6.1
hsa-miR-128-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000611617
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-559
0.025
3
XLOC_000744
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001429
Biotype: transcript isomorph
Gene id: XLOC_000744
Gene Name: XLOC_000744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-98
0.014
1
6mer
1564-1588
0.004
1
6mer
1306-1314
0.004
1
6mer
664-683
0.003
1
LOC284581
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2538-2563
0.011
1
6mer
1993-2006
0.009
1
6mer
64-86
0.005
Not Conserved
ZBED3-AS1
hsa-miR-128-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515356
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1723-1728
0.018
0
6mer
323-342
0.004
1
6mer
958-970
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept