LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010288
hsa-miR-128-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-288
0.014
1
6mer
530-553
0.005
1
6mer
796-813
0.004
1
6mer
1099-1117
0.002
0
ZFPM2-AS1
hsa-miR-128-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520433
Biotype: antisense
Gene id: ENSG00000251003
Gene Name: ZFPM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-547
0.020
Not Conserved
6mer
106-116
0.006
2
C10orf85
hsa-miR-128-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000369071
Biotype: lincRNA
Gene id: ENSG00000177234
Gene Name: C10orf85
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1518-1531
0.018
1
6mer
1956-1983
0.004
1
6mer
1324-1332
0.003
0
AF131216.6
hsa-miR-128-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
996-1014
0.011
9
7mer
5447-5474
0.008
1
6mer
844-857
0.005
9
7mer
1631-1653
0.001
Not Conserved
MIAT
hsa-miR-128-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000455640
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-181
0.025
1
CTB-160O22.1
hsa-miR-128-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517511
Biotype: sense_intronic
Gene id: ENSG00000253297
Gene Name: CTB-160O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-82
0.011
0
7mer
1028-1048
0.011
1
6mer
414-429
0.004
1
LOC256880
hsa-miR-128-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_002799.1
Biotype: lincRNA
Gene id: NR_002799.1 (gene)
Gene Name: LOC256880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1762-1773
0.016
2
6mer
1798-1820
0.005
3
6mer
1399-1420
0.003
1
6mer
532-546
0.002
1
RP11-244B22.6
hsa-miR-128-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1170-1176
0.025
0
EGFLAM-AS2
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514377
Biotype: antisense
Gene id: ENSG00000248572
Gene Name: EGFLAM-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
480-494
0.018
1
6mer
488-508
0.007
1
LOC286367
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024011.1
Biotype: sense
Gene id: NR_024011.1 (gene)
Gene Name: LOC286367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
670-681
0.014
0
9mer
2160-2176
0.006
0
6mer
2507-2532
0.002
0
6mer
2243-2257
0.001
2
6mer
1739-1766
0.001
1
RP11-367G6.3
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606385
Biotype: lincRNA
Gene id: ENSG00000272053
Gene Name: RP11-367G6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21-30
0.025
1
MIR497HG
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572453
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-232
0.009
1
7mer
2164-2184
0.006
8
8mer
2371-2397
0.006
0
7mer
2125-2135
0.003
8
7mer
2147-2156
0.001
6
HAND2-AS1
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505621
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-545
0.018
0
6mer
480-500
0.005
3
6mer
361-378
0.003
2
MIR7-3HG
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586721
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-736
0.025
2
ERICH1-AS1
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524139
Biotype: antisense
Gene id: ENSG00000237647
Gene Name: ERICH1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-318
0.020
Not Conserved
6mer
1571-1597
0.002
Not Conserved
6mer
708-734
0.002
Not Conserved
6mer
370-391
0.001
Not Conserved
RP11-715J22.6
hsa-miR-128-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5416-5436
0.015
1
8mer
4047-4067
0.003
0
6mer
277-288
0.002
Not Conserved
6mer
942-959
0.002
1
6mer
3191-3201
0.002
1
6mer
3952-3961
0.001
2
6mer
4139-4148
0.001
1
RP11-32D16.1
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519609
Biotype: lincRNA
Gene id: ENSG00000254135
Gene Name: RP11-32D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-204
0.025
4
XLOC_012370
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
478-495
0.013
Not Conserved
6mer
17-42
0.012
0
CASC15
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605917
Biotype: lincRNA
Gene id: ENSG00000272168
Gene Name: CASC15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-322
0.016
1
7mer
1594-1621
0.006
3
6mer
3840-3849
0.003
0
XLOC_008705
hsa-miR-128-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017683
Biotype: transcript isomorph
Gene id: XLOC_008705
Gene Name: XLOC_008705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-137
0.016
1
6mer
130-151
0.005
1
6mer
1554-1577
0.004
1
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