LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-213H15.1
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000440769
Biotype: lincRNA
Gene id: ENSG00000234292
Gene Name: RP11-213H15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-250
0.026
1
MIAT
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449717
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-315
0.026
1
RP11-172E10.1
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518302
Biotype: lincRNA
Gene id: ENSG00000254060
Gene Name: RP11-172E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-70
0.026
2
RP11-79E3.2
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506650
Biotype: lincRNA
Gene id: ENSG00000250723
Gene Name: RP11-79E3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-304
0.013
0
7mer
381-404
0.009
1
6mer
261-272
0.004
1
HAND2-AS1
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3066-3086
0.018
0
6mer
3021-3041
0.005
3
6mer
361-378
0.003
2
C10orf85
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623529
Biotype: lincRNA
Gene id: ENSG00000177234
Gene Name: C10orf85
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1518-1531
0.019
1
6mer
1956-1983
0.004
1
6mer
1324-1332
0.003
0
RP11-53M11.3
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522001
Biotype: lincRNA
Gene id: ENSG00000254142
Gene Name: RP11-53M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
601-607
0.022
1
6mer
9-32
0.004
1
HAND2-AS1
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507062
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3931-3951
0.018
0
6mer
3886-3906
0.005
3
6mer
355-372
0.003
2
RP5-1195D24.1
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000422574
Biotype: lincRNA
Gene id: ENSG00000236985
Gene Name: RP5-1195D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-133
0.026
0
RP11-622J8.1
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512546
Biotype: lincRNA
Gene id: ENSG00000249111
Gene Name: RP11-622J8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-134
0.026
4
XLOC_010942
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022640
Biotype: transcript isomorph
Gene id: XLOC_010942
Gene Name: XLOC_010942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-90
0.019
1
6mer
154-169
0.007
3
RP11-674E16.4
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000399242
Biotype: sense_intronic
Gene id: ENSG00000214919
Gene Name: RP11-674E16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-142
0.026
1
HAND2-AS1
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2931-2951
0.018
0
6mer
2886-2906
0.005
3
6mer
361-378
0.003
2
KCTD21-AS1
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000523626
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-86
0.026
1
CASC11
hsa-miR-128-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502463
Biotype: lincRNA
Gene id: ENSG00000249375
Gene Name: CASC11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2844-2860
0.016
1
7mer
3082-3094
0.010
Not Conserved
XLOC_007217
hsa-miR-128-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014535
Biotype: transcript isomorph
Gene id: XLOC_007217
Gene Name: XLOC_007217
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2842-2858
0.016
1
7mer
3080-3092
0.010
Not Conserved
CTD-2376I20.1
hsa-miR-128-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554245
Biotype: antisense
Gene id: ENSG00000258560
Gene Name: CTD-2376I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-271
0.015
0
7mer
78-104
0.010
0
AC083884.8
hsa-miR-128-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594967
Biotype: antisense
Gene id: ENSG00000232729
Gene Name: AC083884.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-197
0.019
6
6mer
338-363
0.003
1
6mer
502-523
0.003
1
LINC01010
hsa-miR-128-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038217.1
Biotype: lincRNA
Gene id: NR_038217.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-201
0.015
0
7mer
1238-1254
0.010
3
RP11-244B22.11
hsa-miR-128-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565523
Biotype: lincRNA
Gene id: ENSG00000261800
Gene Name: RP11-244B22.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-151
0.025
0
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